| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0198 |
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| Symbol | |
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| ID | 4278124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 219013 |
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| End bp | 219951 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638132952 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_748899 |
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| Protein GI | 114561386 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACAAA GTCCACCAGT CAATTTAGAG CCCATCCTCT TGGATGCATT AAAACTCACT
CCAAATTGTT TCGGTGTACT CAACCAAGAT AAAGAAGTTA TCTACTGTAA TCAGCACTTC
GCCAGCATCT TTGGCACTAC CGCAGAAGAT GCTATTGGCA AAAAATCAGG CGATTTATTA
CGCCACGCTT GGGAAACTAA GCAAGGCGTT ATTATCAATA CTGATGATTT TGAACAATGG
CTGGAAAATC TGCATAAACT GCATTCAGAA AAGGCTCTGA ACCAGTATGA AACAGACCTG
TCTGATGGGC GTTGGTTTAA AATGACCAGG ATTAACTTAG ACAGTGGTTA CACCATTATT
ATGGGCGCAG ATATCACCAA CCTAAAACAG GCACAAACAT CACTAGAACA AGCACATCAA
CAAATCGAAA GTTTAGTTAA CACCGATCAA CTAACCGGCA TGCATAATCG TCGCTCATAT
AACCAACTGG CAAAACAAGA ATGCGCCAGA GCCATAAGGT TTAATCAACA GTTATCATTG
TTGGTTATCG ACATCGATTA CTTTAAAGTG ATTAATGACA ATTTTGGTCA TGATGGCGGA
GATAGCATAC TCAAACAGTT TGCCCAAATA TGCAGTGATT TACTGCGACA ATCAGATTCA
TTGTCCAGAA TCGGTGGTGA GGAGTTTACC ATCATCTTAC CGATGACCGA CGGTGAAGGT
GCAATGATCA TTGCTGAGCG TATTCGAGAA CATATTGCCA AACACTCATT TCACACCACT
CAAACAAATA ACAACATTAA CGTTACTGTG TCTATTGGCG TAAGCTCTTT AACAGCCGGA
GACAAGGTAA TACAAGACCT TTTTAGCCGA GCAGACATGG CTATGTATTG CGCCAAACGC
GGTGGCAGAA ACCAAGTACA GCAAACACAG CCTGTGTAA
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| Protein sequence | MPQSPPVNLE PILLDALKLT PNCFGVLNQD KEVIYCNQHF ASIFGTTAED AIGKKSGDLL
RHAWETKQGV IINTDDFEQW LENLHKLHSE KALNQYETDL SDGRWFKMTR INLDSGYTII
MGADITNLKQ AQTSLEQAHQ QIESLVNTDQ LTGMHNRRSY NQLAKQECAR AIRFNQQLSL
LVIDIDYFKV INDNFGHDGG DSILKQFAQI CSDLLRQSDS LSRIGGEEFT IILPMTDGEG
AMIIAERIRE HIAKHSFHTT QTNNNINVTV SIGVSSLTAG DKVIQDLFSR ADMAMYCAKR
GGRNQVQQTQ PV
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