Gene Sfri_0136 details

Gene Information

• Locus tag: Sfri_0136
• ID: 4277118
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 154081
• End bp: 154632
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638132886
• Product: NusG antitermination factor
• Protein accession: YP_748837
• Protein GI: 114561324
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator
• TIGRFAM ID: [TIGR00922] transcription termination/antitermination factor NusG

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000274411
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAG TTACAGAAGC GAAAAAAAGA TGGTATGTGA TCCAAGCCTT TTCAGGCTAT 
GAAGGCCGTG TGCTTAAAAC ACTGCTTGAA CATATCAAAA TGCACAATAT GGAAGAATAC 
TTCGGTGAGA TTTTAGTTCC TACCGAAGAA GTTGTTGAAA TGCGTGCAGG TCAACGTCGT 
AAGAGTGAGC GTAAGTTTTT CCCTGGTTAT GTATTAGTCC AGATGGAAAT GAACGACGAT 
AGCTGGCATT TAGTCAAAAG TATTCCACGT GTAATGGGCT TTATCGGTGG TACATCCGAT 
CGCCCGGCAC CGATTTCTGA CAAGGAAGCT GACGCTATTC TTCAACGTCT TCAAGACACT 
GTTGAATCAC CAACTCATCG TATTATGTAC GAGCCGGGTG AAGTTGTTCG TGTGTGTGAC 
GGTCCATTTG CTGACTTTAA CGGTACTATC GAAGAAGTCG ATTATGAAAA AAACCGTATT 
AAAGTTTCGG TGATGATTTT CGGTCGTTCA ACACCAGTAG AATTAGATTT TAATCAAGTT 
GAAAAAAGCT GA 

 

Protein sequence

MTEVTEAKKR WYVIQAFSGY EGRVLKTLLE HIKMHNMEEY FGEILVPTEE VVEMRAGQRR 
KSERKFFPGY VLVQMEMNDD SWHLVKSIPR VMGFIGGTSD RPAPISDKEA DAILQRLQDT 
VESPTHRIMY EPGEVVRVCD GPFADFNGTI EEVDYEKNRI KVSVMIFGRS TPVELDFNQV 
EKS