Gene Sfri_0135 details

Gene Information

• Locus tag: Sfri_0135
• Symbol: secE
• ID: 4277117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 153699
• End bp: 154070
• Gene Length: 372 bp
• Protein Length: 123 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638132885
• Product: preprotein translocase subunit SecE
• Protein accession: YP_748836
• Protein GI: 114561323
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0690] Preprotein translocase subunit SecE
• TIGRFAM ID: [TIGR00964] preprotein translocase, SecE subunit, bacterial; [TIGR01168] Gram-positive signal peptide, YSIRK family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000169097
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAACAA ATACTGAAAA CCAGAGTAAT TCTTTGGATA TCGTTAAGTG GGGCATAGCT 
GCATTGCTAA TTGCTACTGC TGTTATAGGC AATCAATTTT ATGCAGACGC TAATGTTGTA 
GCTCGTGTTG CTGGGGTAAT TATTGCCTTC GCTATTGCAG GCATCATTGC ACTGCAGACA 
AGCAAGGGTA AGCAGGCACA ATCTTTTGCT AGAGAAGCCC ATATTGAAGT GCGTAAAGTC 
GTTTGGCCAA CTCGCCAAGA GGCGCTAAAC ACTACCTTTA TAGTACTTGC AGCTACTGCA 
GTAATGGCAT TAATCCTTTG GGGATTAGAT GCTATATTGT TACGAGTAGT CAATTTAATT 
ACTGGCGTAT AG 

 

Protein sequence

MTTNTENQSN SLDIVKWGIA ALLIATAVIG NQFYADANVV ARVAGVIIAF AIAGIIALQT 
SKGKQAQSFA REAHIEVRKV VWPTRQEALN TTFIVLAATA VMALILWGLD AILLRVVNLI 
TGV