Gene Sfri_0125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0125 
Symbol 
ID4277107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp138520 
End bp139617 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content39% 
IMG OID638132866 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_748826 
Protein GI114561313 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0000124497 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAG CTGCAATGGA TCCTAAAAAC TACGATGCAC AATTACAACA AAAGCGCATC 
AAGCTAGAAA AGGCCTTTGC CGATTTCAAT CCACCAGCAC TTGAAGTCTT TGCTTCTGAG 
CCTATGCATT ATCGTATGCG TGCTGAATTT AGGATGTGGC ATCAAGGTGA TGACTTATAT 
TACTACATGT TTGATAAAGC ACTGAATGCA AAAGTGCGTT GCGATCAATA TTTACCTGCG 
GGTTTAATCA TTAATCAAAT GATGGCTGCA TTAATTGCAG AATTAACACC TAACCCTGCA 
TTACGTTATC GGTTGTTTCA AGTTGATTTC TTGTCGACGT TAAGTGGCGA AATTTTAGTG 
TCTTTGTTGT ACCACCGCCA GCTTGATGAA GAATGGCGTG AACAAGCGAC TCAATTAAAA 
GCTAAGCTAT CTGCTCAATT CAATGTCAAC ATTATAGGCC GTGCGCGTAA GCAAAAAATC 
GATTTAGACA AAGATTTTGT TGTTGAGACC TTAACGGTTA ATGAACAGGT ATTGCATTAC 
AAACAAATTG AAAACAGCTT TACTCAGCCG AATGCAAAAG TCTCTGTAAA AATGTTGGAA 
TGGGCTATTG ATGCGACTAA AGACAGCCAG GGTGATTTAC TAGAATTGTA CTGTGGTAAT 
GGTAATTTTA CGATTGCACT GGCACGAAAT TTCAATCGTG TATTGGCAAC AGAGCTGGCC 
AAGCCTTCAG TTGATGCAGC GCAATACAAC ATCGATATTA ATCACGTTGA TAATGTTCAA 
ATTATTCGCA TGTCTGCTGA AGACTTTAGT GATGCTATGG CGAAAAAGCG CCAATTTAGA 
CGTTTAGAAG GCATCGACTT AGACAGCTAC GATTGTAATA CTATCTTTGT TGACCCTCCT 
CGTGCAGGCA TTGACCCTGA AACATTAAAG CTTATCCAAG GTTATGAGCG GATTTTGTAT 
ATTTCATGTA ATCCAGAAAC ACTGAATGAC AATTTGTTAA CCTTAGGCCA AACGCATAAA 
ATAACGCGCT TTGCGCTATT TGACCAATTT CCATATACCG ACCATATGGA ATCGGGCGTA 
TTACTGGTTC GCAAGTAA
 
Protein sequence
MNLAAMDPKN YDAQLQQKRI KLEKAFADFN PPALEVFASE PMHYRMRAEF RMWHQGDDLY 
YYMFDKALNA KVRCDQYLPA GLIINQMMAA LIAELTPNPA LRYRLFQVDF LSTLSGEILV 
SLLYHRQLDE EWREQATQLK AKLSAQFNVN IIGRARKQKI DLDKDFVVET LTVNEQVLHY 
KQIENSFTQP NAKVSVKMLE WAIDATKDSQ GDLLELYCGN GNFTIALARN FNRVLATELA 
KPSVDAAQYN IDINHVDNVQ IIRMSAEDFS DAMAKKRQFR RLEGIDLDSY DCNTIFVDPP 
RAGIDPETLK LIQGYERILY ISCNPETLND NLLTLGQTHK ITRFALFDQF PYTDHMESGV 
LLVRK