| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0105 |
|---|
| Symbol | |
|---|
| ID | 4278277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 118362 |
|---|
| End bp | 120494 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638132846 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_748806 |
|---|
| Protein GI | 114561293 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATA AAGGGATCCG ACATAACATT ATTGCTGGAA TGCTTATGGG CGCTGCAATG
ATAGCGGCAC CGAGTGCTTG GTCGGAACAA TATGCCGCCA ATTTTAAAGG CACTGACATT
CAAGAATTTA TTAATATTGT CGGTAAAAAC CTCAATAAAA CCATTATTGT AGATCCAACA
GTACGTGGCA AAATTAATGT CCGTAGTTAC GATTTACTTA ATGATGATCA ATATTACCAA
TTCTTCCTTA ACGTACTTCA AGTGTATGGT TATGCAGTGG TTGAAATGGA AAACCACGTC
ATTAAAGTCA TTAAAGACAA AGACGCCAAA ATGGCTTCTA TTCGTGTCGC CGATGACAAG
TCGCCTGGTG TTGGTGATGA AATGGTCACC CGAATTGTTC CTTTATACAA TTCTGAAGCT
AAACAACTTG CTCCCTTACT TCGCCAGTTG AATGATAATG CTGGTGGCGG TAACGTTGTT
AACTATGATC AATCAAACGT GTTAATGATT TCTGGTCGTG CAGCGGTAGT GAACAAGTTG
GTAGAGATTG TTCGCCGAGT TGATAAGCAA GGCGACACCG ACGTACAAGT CGTGGCTTTA
GATTACGCCT CTGCAGGGGA AATTGTTCGC ATAGTCGATA CCTTATATCG CTCAAGTGCT
AACCAATCAC AGCTGCCAGG CCAAGCGCCT AAAGTGGTGG CTGATGAGCG CATGAATGCG
GTTATTGTCA GTGGCGATGA AAAAAGTCGT CAACGTGTAA TCGAACTCAT TAAACGCCTC
GATGCTGAAC AGGCTAGTAC GGGTAACACC AAGGTACGTT ATTTACGTTA CGCCAAAGCA
GAAGACTTAG TTGAAGTATT AACTGGGTTT GCACAAAACT TACAAGATAA TAAAGAGGGT
GCCAGTACTC AGCAAGGCAA CTCAAGTAAG CGTCGTAGTG ATATCAATAT TATGGCCCAC
AGCGACACTA ACTCACTGGT GATTAGTGCT GAACCAGATC AACTGCGTAC CATTGAAAGC
GTCATTAATC AGCTTGATAT TCGCCGTGCT CAAGTGCTCG TTGAAGCCAT TATTGTTGAA
ATCGCTGAAG GCGATAATGT TGGTTTTGGA GTGCAATGGG GCAGCGAAGC GGGTGGCTTA
ACGCAGTTTA ACAACATTGG CCCAACCATT GGTGAAGTCG GTGCCGGTGT GTGGTCTGCA
CGCGAAACTG ATGGCACTAC AGTAACAGTA GGCAATTCAG ATGGCGGCTC TACTACCACC
ACCAATCCAA CCTCTGATGG GGATTACACT TTAATCGCGC AAGCATTGGG TAAAGTGAAT
GGTATGGCGT GGGGCGTGAC CACAGGTAAC TTTGCGGCGT TAATCCAAGC TGTGTCGAGT
GATACAAATT CAAACGTACT AGCAACACCG TCTATTACCA CACTAGATAA CCAAGAAGCC
TCGTTTATTG TCGGTGATGA AGTGCCGATT ATTACCGGTT CAACCTCAAG TTCTAACAAT
GATAATCCAT TCCAAACGGT AGAACGTAAG GAAGTCGGAG TTAAGCTCAA AGTGGTACCG
CAAATCAACG AAGGTTCATC GGTTAAATTA ACTATTGAAC AAGAAGTGTC GGGTGTTAAT
GGTAACACTG GTGTCGACAT CAGTTTCTCT ACTCGTCGTT TAACGACCAC GGTTATGGCA
GATTCAGGCC AAATTGTGGT GCTGGGTGGA TTAATTAACG AAGAAGTACA AGAAAGTATT
CAAAAAGTCC CAATTCTTGG CGATATTCCT TTTATAGGTC ATTTATTCAA GTCTTCTTCT
AGTAAGAAAA CGAAAAAGAA TTTAATGATT TTTATTAAGC CCACCATTAT CCGTGACGGT
ATGACAATGG AAGGGATTGC TGGTCGTAAA TATAATTATT TCAGAGCATT ACAACTGGAA
CAACAAGCTC GTGGTATTAA TTTAATGCCA AATACTCAAG TCCCAGTTCT TGAAGAATGG
GATCAAGAGG CCTACTTGCC AGATGAAGTG AATGACATGC TTGATCGCTA TAAAAGCGGC
AAAGGGCTGA GCACCGATAT ACGTGATTCA GACCCTGCCT TGCGCACTAT CGATGAAAGC
ATGCAAAAGG ACAAGGCTCA AAACAATGAC TGA
|
|---|
| Protein sequence | MNNKGIRHNI IAGMLMGAAM IAAPSAWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
VRGKINVRSY DLLNDDQYYQ FFLNVLQVYG YAVVEMENHV IKVIKDKDAK MASIRVADDK
SPGVGDEMVT RIVPLYNSEA KQLAPLLRQL NDNAGGGNVV NYDQSNVLMI SGRAAVVNKL
VEIVRRVDKQ GDTDVQVVAL DYASAGEIVR IVDTLYRSSA NQSQLPGQAP KVVADERMNA
VIVSGDEKSR QRVIELIKRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQNLQDNKEG
ASTQQGNSSK RRSDINIMAH SDTNSLVISA EPDQLRTIES VINQLDIRRA QVLVEAIIVE
IAEGDNVGFG VQWGSEAGGL TQFNNIGPTI GEVGAGVWSA RETDGTTVTV GNSDGGSTTT
TNPTSDGDYT LIAQALGKVN GMAWGVTTGN FAALIQAVSS DTNSNVLATP SITTLDNQEA
SFIVGDEVPI ITGSTSSSNN DNPFQTVERK EVGVKLKVVP QINEGSSVKL TIEQEVSGVN
GNTGVDISFS TRRLTTTVMA DSGQIVVLGG LINEEVQESI QKVPILGDIP FIGHLFKSSS
SKKTKKNLMI FIKPTIIRDG MTMEGIAGRK YNYFRALQLE QQARGINLMP NTQVPVLEEW
DQEAYLPDEV NDMLDRYKSG KGLSTDIRDS DPALRTIDES MQKDKAQNND
|
|---|
| |