| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0068 |
|---|
| Symbol | |
|---|
| ID | 4277663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 81492 |
|---|
| End bp | 82361 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638132809 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_748769 |
|---|
| Protein GI | 114561256 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCA ATCGTGTACT TCTGACCGCT GTCGGCAGTG TTTTGCTGGC AATGGTGACC
ATTCAATCAG GTGCTTCTTT AGCAAAGCAA CTTTTTCCCT TGGTTGGGCC GGAAGGCACT
ACAGCATTAC GTTTAGGTTT TGCCGCGGCC GTACTTTGGA TGGTGTTTCG TCCATGGAGA
GCCTTACCCC AAGGCCGAGA TTGGCAGAGT ATTATTATTT ATGGTTTGTG TTTAGGTGGG
ATGAATATTC TGTTTTATTT AGCCATTGAA CGTATCCCAT TAGGGATTGC GGTTGCGCTA
GAGTTCACTG GTCCTTTAGC GGTGGCATTG TTTGGGTCTA AACGGAAAAG TGATTTGTTT
TGGGTTGCTT GTGCGATAGC GGGTATTTTG CTTCTTATGC CAAGCTTGTC TAGTACACAA
GGCCTCGATT TAGTCGGGGC ATTAATGGCG TTGGGGGCGG GAGCATGTTG GGCTGGATAC
ATTTTATTTG GCACCCGTAC TGGTAAGCAG GCATCAGGCG GTATTACGGT TGCTCTCGGG
ATGACTGTTG CTGCAGTGGT GTTAGTGCCT GTAGGCGCCG TTAGCCAAGG TTTGGCGTTA
CTTAGCTGGG AAGTCTTGCC GCTTGGCTTA TTGGTTGGGG TGTTATCGAG TGCATTACCA
TACTCGTTGG AAATGATAGC CCTTAGAAAC ATGCCAACAC AGGCCTTTAG CGTGCTAATG
AGTCTAGAAC CTGCCATCGC CGCATTGGCT GGTTTTGTTA TTTTAAGTGA GCAATTAACC
ATGCTGCAGT GGTCTGCCAT TGGTTTAGTG ATTATTGCCT CAATTGGCAG TAGTTTTACG
CCTAAGAAAG CCATTGAAAT GGGCGTGTAA
|
|---|
| Protein sequence | MQINRVLLTA VGSVLLAMVT IQSGASLAKQ LFPLVGPEGT TALRLGFAAA VLWMVFRPWR
ALPQGRDWQS IIIYGLCLGG MNILFYLAIE RIPLGIAVAL EFTGPLAVAL FGSKRKSDLF
WVACAIAGIL LLMPSLSSTQ GLDLVGALMA LGAGACWAGY ILFGTRTGKQ ASGGITVALG
MTVAAVVLVP VGAVSQGLAL LSWEVLPLGL LVGVLSSALP YSLEMIALRN MPTQAFSVLM
SLEPAIAALA GFVILSEQLT MLQWSAIGLV IIASIGSSFT PKKAIEMGV
|
|---|
| |