| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0057 |
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| Symbol | |
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| ID | 4277652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 70083 |
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| End bp | 72932 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638132798 |
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| Product | twin-arginine translocation pathway signal |
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| Protein accession | YP_748758 |
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| Protein GI | 114561245 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTAA CCCGCAAAAC AGACACGGCC ACCAAAGCTG AAAAGTCAGG CCTAGGTCTT
AACCGACGTC AATTCCTCAA GTCTGCCAGT TTGGCGACGG GTGGTATTGC AGCGGCTTCA
ATGCTTGGCG CAGGTATGAT GCGTAAAGCT GAAGCTAAAG ATGTACCGCA CAACGCACCT
ACAGAAATAA AACGGACGAT TTGTTCACAT TGTTCAGTAG GTTGTGGTGT TTATGCTGAA
GTTCAAAATG GTGTGTGGAC AGGGCAAGAG CCTGCGTTCG ATCATCCATT TAACCAAGGT
GGACATTGTG CTAAAGGCGC AGCATTACGT GAGCATGGTC ATGGTGAAAA ACGCTTAAAA
TACCCAATGA AGCTAGAAGG TGGTAAATGG AAGCGTCTAT CATGGGATCA AGCCATCAAT
GAAGTAGGCG ACAAAATGGA GTCGATTCGT CAAGAGTCTG GTCCTGATTC AGTTTACTTT
ATGGGTAGTG CTAAATTTTC GAACGAACAA GCTTATATGT ATCGCAAATT AGCAGCAATG
TGGGGCACTA ACAACGTCGA TCACTCTGCT CGTATTTGTC ACTCTACCAC GGTAGCCGGT
GTTGCAAACA CTTGGGGCTA CGGTGCGCAA ACTAACTCGT TTAACGACAT CCGCAATTCA
AAATGCATGA TGTTTATTGG GTCTAACCCA TGTGAAGCTC ACCCAGTGGC GATGCAACAC
ATTTTGATTG GTAAAGAACG CGGTGCCAAA ATCATCGTAG TCGATCCACG TTTTACCCGT
ACAGCGGCTA AGTCTGATGA ATATGTCCAT ATTCGTCCAG GTACTGACAT TCCATTTATT
TATGGTCTGT TATGGCACAT TTTCGAAAAC GGCTGGCAAG ATGATTCATT CATTTCTCAA
CGAGTATACG GCATGGAACG TATCCGAGAA GAAGTGAAAA AATACACTCC AGAAGAAGTC
GAGCATATTG CCGGTGTGCC AAAAGCACAA ATGTACCGTG TTGCGAAAAT GATGGCAGAA
ACTAAGCCTG GCACTATCGT TTGGTGTATG GGTGGTACTC AGCATCACAT TGGTAATGCT
AACACTCGTG CTTACTGTAT TTTACAGCTT GCCCTTGGCA ACATGGGTAT AGAAGGCGGC
GGAACTAACA TTTTCCGTGG TCACGATAAC GTACAGGGTG CGACTGACTT TGGTTTGTTA
TTTGATAACT TACCTGGTTA TTACGGCTTA ACCTCAGGCG CATGGGACCA TTGGGCCAAT
GTGTGGGACC TTGAACCAAA GTGGATCACC GAACGTTTTG ATCAAGGTGA ATACTTAGGT
CAATCACCAC AAACATCTGC AGGTATTCCT TGTTCGCGTT GGCACGATGG TGTGTTAGAA
GACAAAACCA AAATTGCCCA AAAAGACAAT ATTCGTCTGG GATTCTTTTG GGGTCAGTCT
GTTAACACCG AAACTCGTGG TCGCGAAGTA CGTGAAGCAC TGAATAAAAT GGATACCATT
GTGGTCGTTG ATCCATTCCC AACCATGGCG GGTGTTATGC ACGAACGCCA AGATGGAGTG
TATTTATTAC CCGCGGCAAC TCAGTTTGAA ACTTATGGTT CAGTGTCTGC TTCAAACCGT
TCACTGCAGT GGCGTACGCA AGTTATCGAA CCATTATTTG AGTCATTACC TGATCACACT
ATCATGTATA AACTGGCCAA AAAATGGGGC GTTGCGGACC AATTCTGTAA GCACATCAAG
GTTAATGGCG ATGAGCCATT AGTGGAAGAC ATTACACGTG AATTTAACAC CGGTATGTGG
ACTATTGGTT ATACAGGCCA AAGCCCTGAA CGTTTGAAAA TGCACCAAGA AAACTGGGGC
ACATTCGACG TTAACTCACT TGAAGCACCC GGCGGCCCAG CTAAAGGCGA AACCTATGGT
TTACCTTGGC CATGTTGGGG TACACCAGAG CAGAAACACC CTGGTTCTCA AATCTTGTAC
CGCACCGGAC GTGAAGTTAA AGACGGTGGT GGTAACTTCC GTGCACGTTA TGGTGTTGAA
CATAACGGCA ATAACATTCT TGCTGAAGGT TCTTTCTCAA AAGGCTCTGA AATTCAAGAT
GGTTACCCAG AGTTTACAGC CGACATGCTA AAACAGCTTG GTTGGTGGGA TGACCTAACA
GCAGAAGAAA AAGTCAAAGC TGAAGGTAAA AACTGGAAAA CTGATATCTC TGGCGGTATT
CAGCGTGTGG CAATTAAGCA TGGTTGTATG CCTTACGGTA ACGCAAAAGC GCGTTGTATC
GTGTGGAACT TCCCTGACGA TATTCCATTA CATCGTGAAC CGTTATACAC CCCTCGTCGT
GACCTAGTGG CTAAATACCC TACTTATGAA GACCGTATGG TGGCTCGTCT ACCAACGCTT
TATAAAACCA TTCAAGACAA GGATTTTGCT ACCGACTACC CACTTGCAGT AACAACCGGA
CGTTTGGTTG AATACGAAGG TGGTGGTGAA GAAACCCGTT CAAACCCATG GCTTGCAGAA
CTACAGCAAG AAATGTTTAT CGAGATCAAC CCAGCAGATG CTGCAGATCG CGGTTTACGT
GATGGCGATG ACGTATTTGT TCACAGTCCA GAAGGTGCAA AAATTACCGT TAAGGCAATG
GTGACACCAC GTGTTATTGC AGGTGAATGT TTTATGCCAT ACCACTTTGC AGGCGTATTT
GAAGGCAAGA GTTTAGCCAA AAACTACCCT GAAGGAACCG TTCCTTATGT GATTGGCGAA
TCTGCCAATA CCGTAATGAC CTATGGTTAT GATGTCGTAA CGCAAATGCA AGAGACCAAG
TCTAGCTTGT GTCAAATAAG CAAAGCCTAA
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| Protein sequence | MRLTRKTDTA TKAEKSGLGL NRRQFLKSAS LATGGIAAAS MLGAGMMRKA EAKDVPHNAP
TEIKRTICSH CSVGCGVYAE VQNGVWTGQE PAFDHPFNQG GHCAKGAALR EHGHGEKRLK
YPMKLEGGKW KRLSWDQAIN EVGDKMESIR QESGPDSVYF MGSAKFSNEQ AYMYRKLAAM
WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIRNS KCMMFIGSNP CEAHPVAMQH
ILIGKERGAK IIVVDPRFTR TAAKSDEYVH IRPGTDIPFI YGLLWHIFEN GWQDDSFISQ
RVYGMERIRE EVKKYTPEEV EHIAGVPKAQ MYRVAKMMAE TKPGTIVWCM GGTQHHIGNA
NTRAYCILQL ALGNMGIEGG GTNIFRGHDN VQGATDFGLL FDNLPGYYGL TSGAWDHWAN
VWDLEPKWIT ERFDQGEYLG QSPQTSAGIP CSRWHDGVLE DKTKIAQKDN IRLGFFWGQS
VNTETRGREV REALNKMDTI VVVDPFPTMA GVMHERQDGV YLLPAATQFE TYGSVSASNR
SLQWRTQVIE PLFESLPDHT IMYKLAKKWG VADQFCKHIK VNGDEPLVED ITREFNTGMW
TIGYTGQSPE RLKMHQENWG TFDVNSLEAP GGPAKGETYG LPWPCWGTPE QKHPGSQILY
RTGREVKDGG GNFRARYGVE HNGNNILAEG SFSKGSEIQD GYPEFTADML KQLGWWDDLT
AEEKVKAEGK NWKTDISGGI QRVAIKHGCM PYGNAKARCI VWNFPDDIPL HREPLYTPRR
DLVAKYPTYE DRMVARLPTL YKTIQDKDFA TDYPLAVTTG RLVEYEGGGE ETRSNPWLAE
LQQEMFIEIN PADAADRGLR DGDDVFVHSP EGAKITVKAM VTPRVIAGEC FMPYHFAGVF
EGKSLAKNYP EGTVPYVIGE SANTVMTYGY DVVTQMQETK SSLCQISKA
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