Gene Sfri_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0048 
Symbol 
ID4278255 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp62765 
End bp63379 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content44% 
IMG OID638132789 
Productchorismate lyase 
Protein accessionYP_748749 
Protein GI114561236 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTGA CCAGTATTAG CTTTCCTTAT GGTGAATCAA TTCATTGGTT TTCGCCACAA 
AAGATCGATT CATTGCCTCA TAGCCAACTT AAAGAGTGGC TATTAGCAAC CGGAAGTTTG 
ACCCAACGCC TCAAGACACA CTGCAAACAC TTTGAAGTAA AAGTGTTAGG CGAGCATTTA 
CTTGAGCCTC TGGCGGATGA ATTTCCTGCT CAAACTAACC CCGTTTGGAT CCGCGAAGTA 
TTATTGTGTC TTGACGGTAC CCCGTGGGTA TTTGCCCGCA CACTGATCCC ACAAACGATT 
TTAGGCTCTC AAACCCCTAA CTATCAAAAT GCTGATGATA AACAGATTCG TGAGCAACAG 
AATGATTTTA CTCGCCTTGG CACTCGGCCT TTAGGTGAAT TACTGTTTAG TAGCCCAGAC 
ATTACTCCCG GCAATATTGA AGTCGCTCAG TTTGAAACCT GTGGCCGTTT AGCTGCCCTA 
GCCACCAGCT TAAATCAACA GGTTAATAGT AGTTTATGGG GACGTAGACG TTACTTTAAC 
TTGCACGGTT CACAGCTAAT TGTCAGCGAA ATATTTCTGC CTGCTGCGGT CGAGTACATC 
AACCAAAGCA TTTAA
 
Protein sequence
MNVTSISFPY GESIHWFSPQ KIDSLPHSQL KEWLLATGSL TQRLKTHCKH FEVKVLGEHL 
LEPLADEFPA QTNPVWIREV LLCLDGTPWV FARTLIPQTI LGSQTPNYQN ADDKQIREQQ 
NDFTRLGTRP LGELLFSSPD ITPGNIEVAQ FETCGRLAAL ATSLNQQVNS SLWGRRRYFN 
LHGSQLIVSE IFLPAAVEYI NQSI