| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0038 |
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| Symbol | |
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| ID | 4278245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 47851 |
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| End bp | 50334 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638132779 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_748739 |
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| Protein GI | 114561226 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.104511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCTCGGT TGCCGAAACT TTCTCTGTCT TTGCTTGTTC CTGCATGTAT TTTTATCCTT
TACCTTGGCT TGGTATGTGG GGAGTATTTC TATGAGCATG CAGAGCTAAA TGAACAACTT
GCATTAAGAC AGTCAGAACA AATACAGAAA GATTTATTTA GAATGCGTCA TGTTGTGGAA
TCATCTCTGT TGACGCAAGA TTTAGAACGA ATAGAGCAAG AGGTTGCTTT AGTCTCAACA
GACCAAAACA TGATGGTGTA TGTAATACTT GATTCGGGTA GTGAAATTCA ATTTGCCAAT
CATATTATTT GGCGAGAAAG TAATGCTACT AATGTGTTAG AGGGCTATTC GGCTGATTTA
CATAGAACGG TTATCACCAA TAATAAACCT TTTTTAAAGG TGAATTTCGA TCGTTTATCA
ATTCAGGCTT ACTATCCCCT TAATGCAAAT TCTCGTTACA GCTACTCGAA TTCTGTAGAG
CTAATTTATT TAGAATATGA CATTGCCAAT GTCTTATCAG AAGCGGTTGA TAGTCTGTTA
AAGCGCTTTA TCGAGATATG GGGAATTGGC GCTTTATTGT TGTCGTTATT CTGTGTCATG
TTGCATTATT TACTGATAAG ACCGTTAACT CAATTAAGCC AAGCCGCTAA AAATCTCGAT
TCTCCAGATT TCAATACTGA TATTGTGTGC ACATCGACCG AACTGGTTAA CTTACGCGAC
TATTTGAATC AGGTTAATGG TCGGTTATCC CGCAGTAAAA AACGTCTAAA TGATGCAGAG
CAACGTTGGC TTTTTGCAGT TGAGGGCGCT CGTAATGGTA TTTGGGATTG GTGTATTGCT
ACTGGCGATG TGTTTGTTTC TGATCGATGG AAAGATATCT TAGGCTACCA ACCTTATGAG
CTAGATAATG ACTATTCTGT CTGGGAGTCT CGTTTACATC GAGATGATAA GGCGCAGGTA
TTAAATACCT TACAGAATTA CATTAATAAC CAGCATGAAT ATTATGAAAG CGTGCATCGT
TTACGTCATA AAGACGGTCG TTATATTTGG ATTTTGGATC GTGGAAAAAT AGTTGAGTGG
GATGAACTTG GGCGTCCATT ACGAATTATT GGCACCATAA CAGATGTTTC TGGTGATGTT
AAAAGCCAAC AAATTACTCC TGATAAGCAG GGACATAGTG GCCTCACGGA TTTAATAAAT
CGTGATGTAT TAGCCGATCA GCTTTATGAT TTACAGGTTC TTAGTCGCAA GACTGGTCAG
TTTTCTGCGC TTCTTATGAT CAATTTAGAT AATTTTAAAT TAATTAATGA TGCTTTGGGT
CACCAACTTG GCGATAGATT ATTAATGCAG ATAGCAGCCC GCTTATCTGG TACATTCTCT
AGTGCTGGTT TGGTTGCTCG CCTTGGAGCA GATGAGTTCG TTATTCTAGC CAAAAATTTT
GGCAATGAAA TTGATCAACC AAGTAAACGT GCATTAGCAC TGGCTAGTGA AGTGAGGCAG
TTAATTGGCC GCGGTTACAC CATTTCAGAG CAAAATTTAT CAATTTCAGC TCGGATTGGG
TTAGTTGTTT TTGATGGTAT TGAGTCATTA GAACCTCAAG TACTGTTGGC TCGTGCAGAT
AGCGCTATGG AGCAAGCAAA AGATAGTCGC TCTAATGGTT GTGCCATTTA CCAACCTGAA
TTAGATCAAA ATCAAGTTCA ACCATTCAAA TTACAAAACG AGCTGAAACT GGCTATCCAG
AACAAGCAGA TGTCATTGGT TTATCAACCC GTTGTTGATC AGGCTGGGCA GCTCAATAGC
ATTGAAGTAC TAATGCGTTG GTATCACCCG CAGTACGGAT ATATTAATCC ACGTAAGTTT
ATTGCGTCAG CTGAACTGTC TGACTGTATT TTTGAATTAG AGCTGTGGGC ATTAGATCAA
GTCTGTGAAC TTATTCAAAC ACTTCAACAG GCAAACGCGA CAGTGCCTTT AATGTCATTA
AATGTATCTT CTCGTCACTT TCATCAAGAT CACTTCGTAA ACGTAGTAAT GAATCGAATC
AATGCAGCAC ATGTCTCAGC TACATTGTTT CAGTTCGAGT TATCTGAAGA TGTATTCGTG
GTCAATGCTA ATGTTGCCAG AAACAAAATT GCTGAGTTCC AACGATTCGG TGTGAACATT
GCGATGGATA ATTTTGGTGG GGGATCTTGC GCAGTCCATT TATTACAAGG TATTCGTTTT
TCACAAGTGA AGCTAGCTGC TGTCTATATT GAAGATATAG AATATAACCC TGAAACCTTT
AACATTGTGA ATGCCATTGT TGAGTTTGCT ACTAAGTTAA ACTTTCCTGT AGTGGCTAAA
CAAGTTGAGA ATAAGCAGCA ACTTAATTTA CTGACCCATG CAAAATGTAC TTGGTTTCAA
GGCTATATTA TCAGTCGACC ACTAGCTCAT GACGACATTA TTCAATTAAT TAAGACACAG
CTATCTTTGA GTGTTGTGCC ATAA
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| Protein sequence | MPRLPKLSLS LLVPACIFIL YLGLVCGEYF YEHAELNEQL ALRQSEQIQK DLFRMRHVVE
SSLLTQDLER IEQEVALVST DQNMMVYVIL DSGSEIQFAN HIIWRESNAT NVLEGYSADL
HRTVITNNKP FLKVNFDRLS IQAYYPLNAN SRYSYSNSVE LIYLEYDIAN VLSEAVDSLL
KRFIEIWGIG ALLLSLFCVM LHYLLIRPLT QLSQAAKNLD SPDFNTDIVC TSTELVNLRD
YLNQVNGRLS RSKKRLNDAE QRWLFAVEGA RNGIWDWCIA TGDVFVSDRW KDILGYQPYE
LDNDYSVWES RLHRDDKAQV LNTLQNYINN QHEYYESVHR LRHKDGRYIW ILDRGKIVEW
DELGRPLRII GTITDVSGDV KSQQITPDKQ GHSGLTDLIN RDVLADQLYD LQVLSRKTGQ
FSALLMINLD NFKLINDALG HQLGDRLLMQ IAARLSGTFS SAGLVARLGA DEFVILAKNF
GNEIDQPSKR ALALASEVRQ LIGRGYTISE QNLSISARIG LVVFDGIESL EPQVLLARAD
SAMEQAKDSR SNGCAIYQPE LDQNQVQPFK LQNELKLAIQ NKQMSLVYQP VVDQAGQLNS
IEVLMRWYHP QYGYINPRKF IASAELSDCI FELELWALDQ VCELIQTLQQ ANATVPLMSL
NVSSRHFHQD HFVNVVMNRI NAAHVSATLF QFELSEDVFV VNANVARNKI AEFQRFGVNI
AMDNFGGGSC AVHLLQGIRF SQVKLAAVYI EDIEYNPETF NIVNAIVEFA TKLNFPVVAK
QVENKQQLNL LTHAKCTWFQ GYIISRPLAH DDIIQLIKTQ LSLSVVP
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