| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0036 |
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| Symbol | |
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| ID | 4278243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 39408 |
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| End bp | 40631 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638132774 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_748737 |
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| Protein GI | 114561224 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000170685 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAAACTA AAGGTAGCAT TAACAATAAA CACATTGCCT ATGTCAACGT TAAGAGTCAC
CTACTGCTAC TTGCTGTGCC TTTATTATTG TTCGTCCTCA TTTTCACATT CGCCATACCC
GAGAATTCAA TTCCCTATTT ATATCTAATA CTTATTTGCA GTGTTTATGC TTTGAGTTAT
GGCATTACGT ATTACATACA CAAACAAAAT ATTTTGCGGC TTTGGCAACA TTTAGAGCAT
GTGATCCACA TTAACGATAC CACTTTTGAG TTGGTGAATT TATCTAGTCA ATATGATTCT
GAAAATGCTT TTTTAGACGC CCTATTACAA AAAGCGGTAA GTGCTATAGA TGATGCTGAA
ATGGGCAGTA TTATTCTGGT TGATAAAAAA ACTAAAAGAC TACAATTTGA GTCGGTAGTG
GGCTTGGATA TAAAGGCACT TCGAAAAATA AATTTTACTC TTGAGGAGAC TTTTCAATTC
AGAAAGACTC ATGGCCGTTG TGATAAAGCT GTTGTTATTA ACAATATGAA AAACATCAAT
GCTAAAAGTA CCCTCACTAA CGATGACCAA CATGCACTTT TACATGCGTC AATAAAACCC
ATTTGTTCCA CCTTGTCTAG CCCTATCCGT ATTGACGGAG AGCTTTACGG AATGATGAAT
TTAGACAGTA GCAAGATGGA AGCCTTTGGT GACTATGATA TAAATCTGGT TAATATTCTT
ACATCAGAAG CCGCAAACGC GATTTCACTG TACCAAAAGT CTAAAAAAAT TGAGATTTTG
GCTGATTATG ACGGCTTAAC CGAGCTGTAT AATCGCAAAA AATTTGATGC AACGATTCTG
CAATGGCAAC ATCACCCAGA GTTAGCAAGC TATATCATTA TTTTGGATAT GGATAACTTA
AAGCCGCTAA ATGATCAGCA CGGACATCAG GCCGGGGACG ATGCATTAAA GGCTTTTGCG
CAATCACTAA AATCAATGTG GCATCCTCAT TTTTTAGTCG CTAGATATGG CGGTGATGAA
TTTATTGCAT TATGCCGTGG CCCCATCGAT GTCTTAGAGC AGCAAGTAAT ACAATTGCAG
CATGATCTAG CGCTGTTAAG CCCCGCAATT CATTTTAGCT ACGGATTTGC TCAGTATGAT
CAAGATTGGG CTAACGCGTT TAAACAGGCA GATAATAATA TGTATAGCCA AAAGCGACTG
AAGAAACAAC TGGATCAGCC TTAA
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| Protein sequence | MQTKGSINNK HIAYVNVKSH LLLLAVPLLL FVLIFTFAIP ENSIPYLYLI LICSVYALSY
GITYYIHKQN ILRLWQHLEH VIHINDTTFE LVNLSSQYDS ENAFLDALLQ KAVSAIDDAE
MGSIILVDKK TKRLQFESVV GLDIKALRKI NFTLEETFQF RKTHGRCDKA VVINNMKNIN
AKSTLTNDDQ HALLHASIKP ICSTLSSPIR IDGELYGMMN LDSSKMEAFG DYDINLVNIL
TSEAANAISL YQKSKKIEIL ADYDGLTELY NRKKFDATIL QWQHHPELAS YIIILDMDNL
KPLNDQHGHQ AGDDALKAFA QSLKSMWHPH FLVARYGGDE FIALCRGPID VLEQQVIQLQ
HDLALLSPAI HFSYGFAQYD QDWANAFKQA DNNMYSQKRL KKQLDQP
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