Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0024 |
Symbol | def |
ID | 4278301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 29528 |
End bp | 30094 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638132762 |
Product | peptide deformylase |
Protein accession | YP_748725 |
Protein GI | 114561212 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAGTA TAGCTAACTG GCTGAAATTT GACAGACTTG CTAAGAGTTT ATATATGCCA TTACTTAATG TTTTACGCTT TCCAGACGAA CGTTTACGCA CTATCGCTCA ACCTGTAACG GATTTCGGTC CACAATTACA GACACAAATA GATAACATGC TCGAAACCAT GTACCTAGAG AAAGGTATCG GTTTAGCTGC TACTCAAGTG GATTTTCATC AACAATTGAT TGTGATGGAT CTACAAGATG AGGTTGAACG GCCAACTATT TTTATTAATC CTCAAATAGT GGCTAGCAGT GGTGACTTGG CTAATGAAGA AGGTTGCCTA TCGGTACCCG GTATTTATGC CAAAGTTGAC CGTGCAGAAT TTGTCACCTT AAAAGCGCTA GATCGTCACG GTAAAGAATT TATCGTTGAA GCAGATGAGT TGTTTGCTAT TTGTATTCAA CACGAGATGG ATCACCTTAA AGGTAAACTA TTTGTCGATT ATTTATCGCC TCTAAAACGT CAACGCATTA AAACTAAGCT TGAAAAAGAA GCTCGTTTAG ATGCTAGAGA AGCATAG
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Protein sequence | MASIANWLKF DRLAKSLYMP LLNVLRFPDE RLRTIAQPVT DFGPQLQTQI DNMLETMYLE KGIGLAATQV DFHQQLIVMD LQDEVERPTI FINPQIVASS GDLANEEGCL SVPGIYAKVD RAEFVTLKAL DRHGKEFIVE ADELFAICIQ HEMDHLKGKL FVDYLSPLKR QRIKTKLEKE ARLDAREA
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