Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0012 |
Symbol | fadA |
ID | 4277695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 15577 |
End bp | 16740 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638132750 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | YP_748713 |
Protein GI | 114561200 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAG CTGTTATCGT AGACTGCATT CGCACCCCAA TGGGCCGTTC TAAGGCTGGG GTATTTAGAA ATGTACGTGC AGAAACATTG TCTGCAGAAC TAATGAAAGC ACTAATGGTG CGCAACCCAC AATTAGACCC AAACGACATT GAAGATGTTA TTTGGGGTTG TGTGCAACAA ACTCTAGAGC AAGGCTTTAA CATTGCCCGT AATGCATCAT TGTTAGCTGG TATTCCTAAA ACGGCTGGCG CAGTAACGGT AAACCGTTTA TGTGGTTCGT CAATGGACGC CCTTCATCAA GCGGCTCGCG CCATTATGAC TGGCCAAGGT GATACCTTCA TTATTGGTGG TGTTGAGCAC ATGGGTCATG TACCAATGAA CCACGGTGTT GATTTTCACC CAGGCCTTGC CAACCGTGTA GCTAAAGCAT CTGGCATGAT GGGCTTAACT GCTGAAATGT TAGGTAAAAT GCACGGTATC ACTCGTGAGC AACAAGATGC GTTTGCTGTA CGTTCTCACC AACGTGCCCA TGCTGCAACT ATCGAAGGTC GCTTTGCTAA AGAAATTTGG GGCATTGAAG GCCACGATGC CAACGGCGCA CTAATTAAAG TGATGACCGA CGAAGTCATT CGTCCAGAAA CGACACTAGA GTCACTTGCG GGTTTACGCC CAGCATTCGA CCCAGTTAAC GGCACGGTGA CTGCAGGTAC ATCATCTGCA TTATCTGACG GTGCTTCTGC AATGTTAGTG ATGGAAGAAT CTAAAGCACG TGCTTTAGGC TTAACTATCC GAGCACGTAT TCGTTCAATG GCTGTTGCCG GTTGTGATGC TGCAATTATG GGTTATGGTC CAGTACCTGC CACCAAAAAA GCATTAGCAC GCGCGGGCTT GTCGGTTGCC GATTTAGACC TTATCGAATT AAACGAAGCG TTTGCTGCAC AGTCATTACC TTGTGTTAAA GATCTTGGCT TGCAAGATGT TGTCGATGAA AAGATTAACC TGAACGGTGG CGCAATTGCA TTGGGCCACC CACTAGGTTG TTCTGGCGCA CGTATATCGA CAACACTGAT CAACTTGATG GAAGAAAAAG ATGCAACGCT TGGTCTTGCC ACCATGTGTA TCGGTTTAGG TCAAGGTATC GCAACTGTAT TCGAACGCGT TTAA
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Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKALMV RNPQLDPNDI EDVIWGCVQQ TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMDALHQ AARAIMTGQG DTFIIGGVEH MGHVPMNHGV DFHPGLANRV AKASGMMGLT AEMLGKMHGI TREQQDAFAV RSHQRAHAAT IEGRFAKEIW GIEGHDANGA LIKVMTDEVI RPETTLESLA GLRPAFDPVN GTVTAGTSSA LSDGASAMLV MEESKARALG LTIRARIRSM AVAGCDAAIM GYGPVPATKK ALARAGLSVA DLDLIELNEA FAAQSLPCVK DLGLQDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM EEKDATLGLA TMCIGLGQGI ATVFERV
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