Gene Sfri_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0003 
SymbolrecF 
ID4277686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2617 
End bp3699 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content41% 
IMG OID638132741 
Productrecombination protein F 
Protein accessionYP_748704 
Protein GI114561191 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.66734e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTAT CACGCATTAA CATTGGTTCA TTTCGTAATA TTACCTCTGC TTCATTACAG 
CCTTGTGATG GCTTAAATTT GATTTACGGT CAAAATGGCA GTGGCAAAAC CAGTATTCTT
GAAGCGATTT ACTTCTTGGG AATGGGGCGT TCGTTTCGCA GCCATTTATC CCAACGAGTG
ATCAATAATG ATGATGATAA ACTGACCTTA TTTGCGCATT TAATTGATGC AGATAGAGAT
TGTAAAATTG GCTTACGTCG TCATCGAAGT GGTGAGATCG AAGTAAAAAT TGATGGCGAG
AAAGTGAAGC GTTTATCAAC CCTGGCCGAA ACATTACCCA TTCAAGTTAT TACTCCCGAA
AGTTTTTCTT TATTGTTCGA GGGACCTAAA GCCCGCCGTC AATTTATCGA TTGGGGTGCA
TTTCATTCTG ATCCACATTT TTATCAAGCT TGGGTGAATA CTCGAAAGGT ATTAAAGCAA
CGAAACCAAT TACTTAGAAA TCAATCTTCC TATAACCAAA TACAGTTTTG GGATAAGGAG
TTGGTGCGGT ATGCTGAACA GGTTACCGAT ATACGAAATC AATATGTAGA CTCGTTAAAT
GTGCTACTAA AGGGTATAAT CGGAGTGTTT TTACCTCGGA TTGATATTAA GGTTTCTTTT
ACTCGAGGAT GGGATAGTAA AACGGATTTT GCCCAATTAC TTGAAAACCA ATACTCAAGA
GATTTAGCCG CTGGAAATAC GGGCAGCGGC CCCCATAAAG CAGACTTACG TTTGCGTGTG
GGTAATTTGC CAGCGCAGGA TGCGTTGTCC CGTGGACAAT TAAAATTATT AGTCTGTGCA
CTGCGTATTG CACAGGGAAA GTTGCTCAAA CAACAACTAG ATAAAAATAG TATTTATCTA
GTCGACGATT TACCGTCGGA GTTGGATGCA CAGCATAGGC AGCTATTGCT ACAGCTGTTA
ACCGAAACCG GTGCACAAAT TTTTGTCACT GCGATCGATC CGCAAGCAAT AGTCGATTCG
TTATCTAGCC CTCCAAACAG GATGTTTCAT GTGGAACAAG GGCTGGTAAC GGTTATTGAA
TAA
 
Protein sequence
MSLSRINIGS FRNITSASLQ PCDGLNLIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV 
INNDDDKLTL FAHLIDADRD CKIGLRRHRS GEIEVKIDGE KVKRLSTLAE TLPIQVITPE
SFSLLFEGPK ARRQFIDWGA FHSDPHFYQA WVNTRKVLKQ RNQLLRNQSS YNQIQFWDKE
LVRYAEQVTD IRNQYVDSLN VLLKGIIGVF LPRIDIKVSF TRGWDSKTDF AQLLENQYSR
DLAAGNTGSG PHKADLRLRV GNLPAQDALS RGQLKLLVCA LRIAQGKLLK QQLDKNSIYL
VDDLPSELDA QHRQLLLQLL TETGAQIFVT AIDPQAIVDS LSSPPNRMFH VEQGLVTVIE