| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2601 |
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| Symbol | prpD |
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| ID | 4269234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | - |
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| Start bp | 2946388 |
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| End bp | 2947842 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638127360 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_743431 |
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| Protein GI | 114321748 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000141042 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000146252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAGCGCCA CCGATCGGGG TATCAAGTCC ACCAAGCGTC CCAAACCGGA CAAAGAGCTG
GTCGACATCG CCAAGTACGT CGCCAAGAAG GAGATCAAAT CCGACGAGGC CTACGAGACC
GCCCGCTACT GCCTGATGGA CACCCTGGCC TGCGGCATGC TGGCCCTGCA ATACCCCGCC
TGCACCAAGC TGCTCGGCCC CGTGGTCCCC GGGGCGCAGA TGGCCGACGG CGCCCGGGTG
CCCGGCACCC CCTACCAGCT CGACCCCGTC CAGGCCGCCT TCAACATCGG CGCCATGGTC
CGCTGGCTCG ACTTCAACGA CACTTGGCTC GCCGCCGAGT GGGGCCACCC CTCCGACAAC
CTGGGGGGCA TCCTCGCCGT GGCCGACTAC CTCAGCCGCC AGCGGCTGGC CCAGGGCAAG
AAACCCCTGA CCATGAAGGA CGTGCTCACC GCCATGATCA AGGCCCACGA GATCCAGGGG
GTGCTCGCGC TGGAGAACTC CTTCAACCGG GTGGGGCTGG ACCACGTCAT GCTGGTGCGC
ATCGCCACCA CCGCCGTCGC CACCGACATG CTGGGCGGCA GCCAGGACGA CATCACCAAC
GCCCTCTCCC ACGCCTTCAT CGACGGCTCC GCGCTGCGCA CCTACCGCCA CGCCCCCAAC
ACCGGCTCCC GCAAGAGCTG GGCCGCGGGC GATGCCAGTG CCCGCGGCGT GCGCCTGGCG
CTGATCGCCA TGACCGGCGA GATGGGCTAT CCCACCGCCC TGTCCGCCGA CTTCTGGGGC
TTCAACGACG TGCTCTTCAA GGGCAACAAG CTGGAGATCA ACCAGGCCTA CGACAGCTAC
GTGATGGAGA ATATCCTGTT CAAGATCTCC TTCCCCGCCG AATTCCACGC CCAGACCGCC
GTGGAGGCCG CCATGACCCT GCACGAGCAG GTGCGTGACC GGCTCGACGA GGTGGAGAAG
GTGGTCATCG AGACCCAGGA GGCCGGGGTG CGGATCATCG ACAAGGAGGG CCCGCTGGAC
AACCCCGCCG ACCGCGACCA CTGCATCCAG TACATGGTCG CCGTGCCGCT GATCCACGGC
CGGCTCACCG CCGACGACTA CGAGGACGCC GTCGCCGCCG ACCCGCGTAT CGACGCCCTG
CGCGAAAAGA TGGAGGTGGT GGAGCACAAG CCCTTCTCCA AGGACTACCT GGACCCGAAG
AAGCGCTCCA TTGGCAATGC CGTGCAGCTC TTCTTCAAGG ACGGGAGCAA GACCGACCGG
GTCGCGGTGG AGTACCCGAT CGGCCACCGC CGCCGGCGCA AGGAGGGTAT CCCGGTGCTG
GTGGATAAGT TCGAGAAGGC CCTGGCCACC CGCTTCGCCC CGCGGCGCGC CGAGGCCATT
CGCAAGGCCT GTGACAAGCA GAAGGGGCTG GAGCGCATGG CGGTCAACGA GTTCATGGCG
CTCTGGACCC TCTGA
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| Protein sequence | MSATDRGIKS TKRPKPDKEL VDIAKYVAKK EIKSDEAYET ARYCLMDTLA CGMLALQYPA
CTKLLGPVVP GAQMADGARV PGTPYQLDPV QAAFNIGAMV RWLDFNDTWL AAEWGHPSDN
LGGILAVADY LSRQRLAQGK KPLTMKDVLT AMIKAHEIQG VLALENSFNR VGLDHVMLVR
IATTAVATDM LGGSQDDITN ALSHAFIDGS ALRTYRHAPN TGSRKSWAAG DASARGVRLA
LIAMTGEMGY PTALSADFWG FNDVLFKGNK LEINQAYDSY VMENILFKIS FPAEFHAQTA
VEAAMTLHEQ VRDRLDEVEK VVIETQEAGV RIIDKEGPLD NPADRDHCIQ YMVAVPLIHG
RLTADDYEDA VAADPRIDAL REKMEVVEHK PFSKDYLDPK KRSIGNAVQL FFKDGSKTDR
VAVEYPIGHR RRRKEGIPVL VDKFEKALAT RFAPRRAEAI RKACDKQKGL ERMAVNEFMA
LWTL
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