| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2516 |
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| Symbol | |
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| ID | 4268771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008340 |
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| Strand | - |
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| Start bp | 2859217 |
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| End bp | 2861013 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638127275 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_743346 |
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| Protein GI | 114321663 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.329688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAGG ATCAGCAGTC TCAGATCAAG CAGCTCATCG CCAAGGGCAA GGAGCAGGGG
TTCCTCACCT ATGCCGAGGT GAACGACCAC CTGCCCGATG ACATCGTCGA TCCCGAGCAG
ATCGAAGACA TCATTGGCAT GATCAACGAC ATGGGTATCA ATGTCCATGA GGTCGCGCCG
GATGCCGATG AGTTGCTGCT CAGTGATGCT GCGGTCAGTA CCGACGAGGA CGAGGCCGAA
GAGGCGGCGG CGGCGCTGGC GGCGGTGGAC GCCGAGTTTG GCCGCACCAC CGACCCGGTG
CGCATGTACA TGCGCGAGAT GGGTACGGTG GAGCTGCTGA CCCGTGAGGG CGAGATCGAG
CTGGCCAAGC GCATCGAAGA GGGGTTGGAC CAGGTGCTGG CCGCGCTCTC CGCCTATCCC
GGTGCGGCGG CCAAGCTGCT CGACCTGTAC CGCAAGGTGC AGGACGGTGA GATGCGCCTG
AACGAACTGA TGGGCGGCTT CCGCAACCCC GACGAGGAAC TCTCCGCCTA CTCCGCCGAC
GCCGGCAAGG AGGAGGACGA GGACGGCGAG GAGGCCGTGG TCGACAACGG GCCCGACCCG
GAGATGGCCG CTGAGCTGTT CCGGCGGCTG GCGGAGGCGG ATCAGCGCAT GCAGGAGGTC
CTGCGGCGAC AGGGCTCCGA CAGCCCCGAG TGCGCGGAAC TGCGTGAGCA GCTGGCGGAG
ATCTTCCTGA CCTTCAAGTT CCCGCCGAAG ATCATCGACC AGCTGGTGGA TGGGCTGCGC
CGGGATGTCA ACGTGCTGCG CCGCAACGAG CGCCACATCC TCAAGGCCTG CACCAAGGCG
GGCATGCCGC GCAAGACCTT CGTGCGCAGC TTCATCTCCC GCGAGACCGA TCCGGGCTGG
CTGGACGAGA TGCTGGCCAG CAAAGAGCCG TGGGCCCAAC GCCTGGCCGA GCACGAGGAC
GATATCCGCC GTGCCCAGCA GGTGCTGATC GACGCCGAGC GTAAGGTGGG TATGACCATC
GGCGAGATCA AGGACATCAA CCGGCGCATG TCCATCGGCG AGGCCAAGGC CCGCCGGGCG
AAGAAGGAGA TGGTGGAGGC CAACCTGCGG CTGGTCATCT CCATCGCTAA GAAGTACACC
AACCGCGGCC TGCAGTTCCT GGACCTCATC CAGGAGGGCA ACATCGGCCT GATGAAGGCG
GTGGACAAGT TCGAATACCG CCGGGGTTAC AAGTTCTCCA CCTACGCCAC CTGGTGGATC
CGGCAGGCCA TCACCCGCTC CATCGCCGAC CAGGCCCGCA CCATCCGCAT CCCGGTGCAC
ATGATCGAGA CCATCAACAA GCTCAACCGG GTCTCTCGGC AGATGCTCCA GGAGATGGGC
CGGGAGCCGA GCCCGGACGA GCTGGCTGAG CGCATGGAGA TGCCCGAGGA CAAGGTGCGC
AAGGTGCTCA AGATCGCCAA GGAGCCGATC TCCATGGAGA CGCCCATTGG CGACGACGAG
GACTCCCACC TGGGGGATTT CATCGAGGAC ATCAACGCCA TGTCCCCGGT GGATTCCGCC
ACCCGGGAGG GGCTGCGCGA ATCGGTCAAG GGCGTGCTCT CCGGCCTGAC CCCCCGGGAG
GCCAAGGTGC TGCGCATGCG CTTTGGCATC GACATGAACA CCGACCACAC CCTGGAAGAG
GTCGGCAAGC AGTTTGACGT CACCCGCGAG CGCATCCGCC AGATCGAGGC CAAGGCCCTG
CGCAAGCTAC GCCACCCGAC CCGCTCCGAG GGTCTGCGCA GTTTCCTCGA CGAGTAA
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| Protein sequence | MTQDQQSQIK QLIAKGKEQG FLTYAEVNDH LPDDIVDPEQ IEDIIGMIND MGINVHEVAP
DADELLLSDA AVSTDEDEAE EAAAALAAVD AEFGRTTDPV RMYMREMGTV ELLTREGEIE
LAKRIEEGLD QVLAALSAYP GAAAKLLDLY RKVQDGEMRL NELMGGFRNP DEELSAYSAD
AGKEEDEDGE EAVVDNGPDP EMAAELFRRL AEADQRMQEV LRRQGSDSPE CAELREQLAE
IFLTFKFPPK IIDQLVDGLR RDVNVLRRNE RHILKACTKA GMPRKTFVRS FISRETDPGW
LDEMLASKEP WAQRLAEHED DIRRAQQVLI DAERKVGMTI GEIKDINRRM SIGEAKARRA
KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI
RQAITRSIAD QARTIRIPVH MIETINKLNR VSRQMLQEMG REPSPDELAE RMEMPEDKVR
KVLKIAKEPI SMETPIGDDE DSHLGDFIED INAMSPVDSA TREGLRESVK GVLSGLTPRE
AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL RKLRHPTRSE GLRSFLDE
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