| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1955 |
|---|
| Symbol | |
|---|
| ID | 4268124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 2224660 |
|---|
| End bp | 2225400 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638126710 |
|---|
| Product | tRNA pseudouridine synthase C |
|---|
| Protein accession | YP_742787 |
|---|
| Protein GI | 114321104 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0419985 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGCCG CCCCGACGAT CCCTCTCACC ATGACTTCGG ACGCGCCCCT GGACATTATC
CACCGGGATC ACGACCTGGT GGCGGTGGAC AAGCCGGCGG GTATGCCGGT GCACCGGTCC
CGCCGCCATC CCGGCGACGC TGTGTTGCTG CAACGGCTGC GCGACCAGCT CGGCCAGTGG
CTCTGGCCGG TGCACCGGCT GGACCCGCCC ACGTCGGGGT TGGTGGTGTT CGCCCTGCAT
CCCGAGGCCG CGCGGGCCCT CGCTGCGCAG TTTCAGCAGC GTGAGGTGGA GAAACGCTAC
CTAGCAGTGG TTCGGGGCTG GCCGTTGGAG CAGGGGCGGG TGGAGCACCC GCTCCGGCGA
CCCGGGCGAT CCGAGCGCCA GCCGGCGGTC ACCGATTTCC ACCGACTCGC GACCACAGAG
CTGCCGATCC CCATGCCGCC GCATCCGACC GCACGCTACG CGCTGTTGGA GCTGCGCCCC
ATCACCGGCC GGCAACATCA GTTGCGGCGG CACATGAAGC ACATCAGCCA CCCGATCATC
GGTGACACCA CCTACGGCAA GGGGCCCCAC AACCGCCTGT TCCGGGAGCG GTTTGGTGCC
AGTGAATTAC TGTTGCGGGC GACACGGCTT GCCTTTCGGC ATCCCGGGAC AGGGGCGCGG
CTGCACCTTG ACTGCCCGCT GAATGAGGCC TGGAGGGCGG TGCTGAGGGG GTCGGGGCTG
GCAGGCGCGG ATGGGATCTA G
|
|---|
| Protein sequence | MRAAPTIPLT MTSDAPLDII HRDHDLVAVD KPAGMPVHRS RRHPGDAVLL QRLRDQLGQW
LWPVHRLDPP TSGLVVFALH PEAARALAAQ FQQREVEKRY LAVVRGWPLE QGRVEHPLRR
PGRSERQPAV TDFHRLATTE LPIPMPPHPT ARYALLELRP ITGRQHQLRR HMKHISHPII
GDTTYGKGPH NRLFRERFGA SELLLRATRL AFRHPGTGAR LHLDCPLNEA WRAVLRGSGL
AGADGI
|
|---|
| |