Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mlg_1334 |
Symbol | sdhA |
ID | 4270007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alkalilimnicola ehrlichii MLHE-1 |
Kingdom | Bacteria |
Replicon accession | NC_008340 |
Strand | + |
Start bp | 1533367 |
End bp | 1535157 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638126087 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_742173 |
Protein GI | 114320490 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.356881 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGGGCG ATTACAAAAT TATCGATCAT CATTACGATG TGGTGGTGGT GGGCGCCGGC GGTGCCGGTC TGCGCGCCAC CTTTGGTATG GCCGAGAAGG GCCTGAAGAC GGCCTGCGTC ACCAAGGTCT TTCCCACCCG TAGCCATACC GTGGCGGCTC AGGGGGGCGT GTCCGCCGCG CTGGGCAACA TGGGCGAGGA CGACTGGCGC TATCACGCCT ATGACACCAT CAAGGGGTCG GACTGGCTGG GCGACCAGGA CGCCATCGAG TACATGTGCC GCGAGGCGAT CCCGGCCATT ATCGAGCTGG AGCACTACGG CGTGCCCTTC TCCCGCACCG AGGAGGGCAA GATCTACCAG CGGCCCTTCG GCGGTATGAC GGTGCGTTAC GGCGAGGGCA CGGCGCAGCG CACCTGCGCC GCCGCCGACC GGACCGGCCA CGCCATTCTG CACACCCTGT ATCAGCAGGC GCTGGCCCAC CAGGCGGAGT TCTTTATCGA GTACTTCGCC ATCGATTTGA TCATGGAGGA CGACCGTTGC CGCGGGGTGG TTGCCCTTAA CCTGGCGGAC GGGACCATCC ACCGCTTTAT CGGTCAGATC ACTGTGCTGG CCACCGGGGG GTACGGCCGG TCCTACTTCT CCTGCACCTC GGCCCATACC TGCACCGGCG ACGGCAGCGG CATGGTGCTG CGGGCCGGCC TGCCGCTGCA GGACATGGAG TTCGTGCAGT TCCACCCCAC CGGGGTTTAC GGCTCCGGCT GCCTGATCAC CGAGGGCGTG CGCGGTGAGG GCGGTTACCT GACCAACTCC GAGGGTGAGC GTTTCATGGA GCGTTACGCG CCCAACGCCA AGGACCTGGC CTCCCGCGAC GTGGTCAGCC GCTCGATGAC GGTGGAGATC CGCGAGGGCC GGGGCGTGGG TCCGAAGAAG GACCATATCC ACCTGCACCT GGAGCACCTG GGTGCCGAGG TTATCCACGA GCGGCTGCCC GGCATCGCCG AGACGGCGCG GATCTTCGCC GGCGTGGATG TCACCAAGGA GCCGATCCCG GTTATCCCGA CGGTGCACTA CAACATGGGT GGGATCCCCA CCAATTATCA GGGTGAGGTG GTCACCCTGA AGGATGGCAA CCCGGACCAG GTGGTGCCGG GGCTGATGGC CATCGGTGAG GCGGCCTGCG TCTCGGTGCA CGGCGCCAAC CGCCTGGGTT CCAACTCGCT GCTCGACCTG GTGGTGTTCG GCCGCGCCGC AGCCATCCGC GCCGCTGAGC TCATCAAGGA GGGCGACACG GTGCAGCGGG CGCTGCAGCC GGGCGCCGGC GACCTGGCGT TGGAGCGGCT CGAGCGGCTG CGTAACGCCA AGGGCAGCAA GCCCACCGCG GAGATCCGCG ACGGCATGCA GGAGACCATG CAGAACTTCG CCGCGGTCTT CCGCACCGGC GAGAGCCTGC AGGAGGGCTG TGAGCGCATG GCCGCCGTCT ATGCCTCCTT CGAGGACGTG GCGGTGAGTG ACCGCAGCCT GATCTGGAAC TCCGATCTGG TGGAGACGCT GGAGCTGGAG AACCTGCTGG GCAACGCGGT GGCGACCATT GAGTCCGCCC GCAACCGCGA AGAGAGCCGG GGCGCGCATG CCCGCGAGGA CTTCCCGGAG CGTGACGACG ACAACTGGCA TAAGCACACC CTGTCGTGGG TGGGCCAGGA CGGCAAGGTC AAGCTGGACT ACCGGCCGGT GCACATGTAC ACGCTCACCG ATGAGATGGA AGTCATTCCG CCCAAGGCGC GTGTCTACTA G
|
Protein sequence | MAGDYKIIDH HYDVVVVGAG GAGLRATFGM AEKGLKTACV TKVFPTRSHT VAAQGGVSAA LGNMGEDDWR YHAYDTIKGS DWLGDQDAIE YMCREAIPAI IELEHYGVPF SRTEEGKIYQ RPFGGMTVRY GEGTAQRTCA AADRTGHAIL HTLYQQALAH QAEFFIEYFA IDLIMEDDRC RGVVALNLAD GTIHRFIGQI TVLATGGYGR SYFSCTSAHT CTGDGSGMVL RAGLPLQDME FVQFHPTGVY GSGCLITEGV RGEGGYLTNS EGERFMERYA PNAKDLASRD VVSRSMTVEI REGRGVGPKK DHIHLHLEHL GAEVIHERLP GIAETARIFA GVDVTKEPIP VIPTVHYNMG GIPTNYQGEV VTLKDGNPDQ VVPGLMAIGE AACVSVHGAN RLGSNSLLDL VVFGRAAAIR AAELIKEGDT VQRALQPGAG DLALERLERL RNAKGSKPTA EIRDGMQETM QNFAAVFRTG ESLQEGCERM AAVYASFEDV AVSDRSLIWN SDLVETLELE NLLGNAVATI ESARNREESR GAHAREDFPE RDDDNWHKHT LSWVGQDGKV KLDYRPVHMY TLTDEMEVIP PKARVY
|
| |