Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mlg_0057 |
Symbol | |
ID | 4270335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alkalilimnicola ehrlichii MLHE-1 |
Kingdom | Bacteria |
Replicon accession | NC_008340 |
Strand | + |
Start bp | 61425 |
End bp | 65042 |
Gene Length | 3618 bp |
Protein Length | 1205 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 638124782 |
Product | ImcF domain-containing protein |
Protein accession | YP_740904 |
Protein GI | 114319221 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGACA AGGCAAGGAA TCGCGTGGCA GGACGCCTGC GCGGCACCAT GGGCAGCGTA ACGGGAGGGC GGGTCAGCCG CTATTCGGGG TGGGTGGGCG CGCTCCGTCG CGGGTGGCCC TGGGTCGTGG GGCTGCTGGG GATAGCATTG CTGGCGGTGG TCTGGATCTG GGGGCCGGCC TGGCAGATCG GTGGCGCCCG GCCCCTGGCC CCCTGGCCGA ACCGGCTGCT GGTCATTCTC TGCGCGGTGC TGGTCGTGCT GGTGATTATT GGGCTCCGCC TCAGGGCCCG CCTGCGCGAT GCCGAACCCC CCCGCGACGA GGCTGAGATC CCCGACCCGG TGGCCCAGGC AACCGCCGGG CAGGAGCAGG GCCTGAATCA TTGCTTGGAC CAGTTGCGGC GCCAGCGCGG GCGCCACGCC CTGCAGGCAT TGCCCTGGTA CCTCGTGCTG GGTCCGGAGG GCAGCGGCAA GACCAGTCTG GTGCAGCGCT CGGGCCAGCG CTTTTCACTC ACCCGGAGCC TCCACCCGCA GGGCGGTGAG GCCTCGGATA GCGGGCTGCG CTGCTGGGCC AGTGACCGGG CCGTCACGCT GGAGCCCGGC GCCGCCTGGC TGTTGCAAGG GGGGTGGGAC AGAGACGGTG CGGATGCCCT GAGCGCCTCC CTCTGGCAGC ACCTGGTCGG CTGGCTGCAG CGGCGTCGCC CCCGACGGCC GCTCGACGGC GTGCTCCTGG TGCTGGACCT GTCCCGGCTC ACCAGCGCCG GCGCCCGGGA CGACTGGGGC GATGCCCTGC GCGAACGCCT GCAGGAGCTG ACCACGACCT ATCAGAGCCG GCTTCCGGTC TACGTGGTCT TCAGCCAGAT GGATCGGTTG TACGGCTTTG ACGCCTTCTT CCGGCACGCT GTCGGTGATG CCCGCTGCGA GCCATGGGGC TTCTCCTTCA GCGCCGGCAG CCTGGCCGAC CCGGACGCCT GGGAGGAGGA GTTCACCGGC GCCTACCGAC GCATGCTCGG CCGCATCGAA CGGCAACTGG TCGCATGGCT GGCCGCGTGT CGTGATCAGG GCGAACGGGA GGCCCTTTTC CGCTTCTCCC GACAGCTGGC CGGTCTCGAG CCCCTCCTGA GCGAAACCCT GCAACGGGTG CTCGGCAGCC GGCGTTATGC CGTTGAACCG CTGGTGCGCG GGGTGTACTT CGCCTCGCTC GGCCAGCAGG GGGTGCCCAT CGATGCCTTT GCCGACGCGG CCACCGCCCG CTATCGCCTG CCCGACCTGG TGCACCGTGC CCGCCGCAAT GGCCAGCAGT CGCTGGCCTG GTTCTCGGAG CGGTTGCTGC AGCGGGTGGT CTTCCCCGAG GCCGGCCTTG CCGGGGACAG CCTCCGCTTC GTCCGCCGCC GGCGTTGGCT GCGCGGTGCC GGCCTGGTGT TCTCCCTGGC AGGGCTGAGC GGATTGGTCA TCGGCTGGGG GCACTACTAT CAGCACAATC TCGTGGCCCT GCAGGCCGTG GAGGCGAGGG CGGAGGCCCT GGCGGACCTG CGACCGGCGC AGGAGCACCT CGACGACCCC AGCGGCCAGC ACCTGGTGCC GGCGCTGGAT GAGCTCCGCG AGGTCGCCGG CGTCTTTGAC GGACCCCGCG GGGCGTGGGC AGGCCTGGCG GATATGGGGC TCTACCAGGG GCACAGGGTC GGTGATGCCA TGGACCAGGC GTACCTGGAC GCGCTCCGCT ACCGGTTCCT GCCGGCCCTG ATGCTCGGCA TTGCCGACGA GATGAACACG CTGGCACCGG GGAGCGAGGA GCAGCTCGTC CGGCTCCGCG TCCTGCGCAT GCTCGCCGAT GCCCGCGGAC GGGAACCGGA TCGGGTGCGG GACTATATGG CCGATCGCTG GCAGGCGCTG TTGCCCAACC GGGGGCGGCT GCAGGGCCGG CTGCTGGAGC ACCTGGACCA TGCCCTCGTC CATACCGACC TGGCGGGCCG GCAGGCGCAC GATCCCCGCG CGGCGGCCGC GCTGGCGCCG GTGGCCGGCA GCATCCGGAA GGCCCAGCAG GCGTTCTCCC GCAGTCCGGT GGATGAGCGG GTCTATACCC TCCTGAAGCG CCGCGGGCAG GACCGAGCCG GTGGCGGCGT AAGGCTGGAC CGCAGCGTTG GGTCGGGTTG GGGCACGGTC TTCCGCGCCG ATGACGATGA TCCGGACGGG GTGACCGTAT CGCCGCTGCT GACCCGTGAC GGCTTTGAGC AGGTCTTTCT CGGAGAGTTG GACGGCGCCA CGGTCCTCGC CCTGAACGAC CTCTGGGTGC TGGGCGAGCG GGACGACCCG CAGTTCAGCG AGCGCGACGA GCAGCGCTTG CGGGAGGCCC TGCGTGAGCA GTATGTGGCC GACTTCCACG CCGGTTGGCG CCGAGCCCTG GGTAACATCC ATCTCACCGA TCTGGAGAGT ATTCCCCACG CCGTGATCGT CATCGACGCG CTGCTGGGGG GCGGCCGTCC GCTGGAACGC CTGCTGGCCG AGATCGAGCG CCACACCCGA CTCTACCCCG AACTCCCGGT GGATGACGAC GTGGCCCGGG ACCGGCTCAG GGGCTCGTCG CGCTACCGGC TGGCCGGGAA GCTGGCCGCG CCCTTCCAAC CCCTCCACGC CCTGCATCGG AAGGGGGAGG AGGCGGACGG CGATCTGGCC GCCGTCCGGG CCGCACTGGG GGCATTGCGA GACCATCTGC GGGCGGTGGA GCAGTCCAGC GAGCCGGGGC GCATCGCCTA CCGTCACGCC CGCAACCGGC TACTGCAGGA CAGCGGGGAT CCGGTGGACC GGGTGGAGCG GCTGGCCGAA GAGTTGCCTG CCCCGTTGGA TGGATTCATG GCGGGTATCG CCGAGCAGAG CTGGCGGCTG ATCAGTGGTG AGGCCATCCG GTACCTGGAG CAGCAGTGGC TGGACGAGGT GATTGCCCCG TTTGAGGCGG ATCTGGCCGG CCGTTACCCG CTGGAACCGA ACGCCCGGCG GGAGGTGGCG CTGGAGGACT TCGAGCGCTT CTTTGCGGCG GGCGGCACCC TGGACAGCTT CTTCATGGAC AAACTGCAGC CCTTCCTCGA CGAGGCCCCG GAACTGCTGG AGGGGCCCGA CGGGCGTTCG CTGCTCAATC CCCGGTTGCG GACGGCGCTG GAGCGGGCGG AGCGGATCCG GGAGGCCTAC TTTGGCCGGG ACGGGCTGCT GGATGTCGGT TTCACCCTGG CCCCGGTGAG CCTCAGCGGT GACAAGCGGC GTAGCGTGCT CAACGTGGAC GGGCAGATTC TGGAGTATCG CCACGGCGCC CCCCAGCGGG TCGCCATGCT CTGGCCCAAC AGCCTGCGTC AGACCAATGA AAGCGGGATC ACGCTGGTAC CCGACCGCGT CAACCGTTCG CCGCGCAGCG AACGCCACCA GGGGGCCTGG GCCTGGTTCC GCCTGCTCGA CGAAGCCCGT GTGGTGGCGG TGGGCGAGCG GGAGCTGCGG CTCAGCTTCC AGGTGGATGG CGGGGAGATG AGCTACCGCC TGACCGCGGA CCGGACCCGC AATCCGTTCA CCCGGCCGCT GACCCGGGGG TACACGGTGC CTGCCACCCT GTACCGCAAC GGGGTCGGCG GACGCTGA
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Protein sequence | MSDKARNRVA GRLRGTMGSV TGGRVSRYSG WVGALRRGWP WVVGLLGIAL LAVVWIWGPA WQIGGARPLA PWPNRLLVIL CAVLVVLVII GLRLRARLRD AEPPRDEAEI PDPVAQATAG QEQGLNHCLD QLRRQRGRHA LQALPWYLVL GPEGSGKTSL VQRSGQRFSL TRSLHPQGGE ASDSGLRCWA SDRAVTLEPG AAWLLQGGWD RDGADALSAS LWQHLVGWLQ RRRPRRPLDG VLLVLDLSRL TSAGARDDWG DALRERLQEL TTTYQSRLPV YVVFSQMDRL YGFDAFFRHA VGDARCEPWG FSFSAGSLAD PDAWEEEFTG AYRRMLGRIE RQLVAWLAAC RDQGEREALF RFSRQLAGLE PLLSETLQRV LGSRRYAVEP LVRGVYFASL GQQGVPIDAF ADAATARYRL PDLVHRARRN GQQSLAWFSE RLLQRVVFPE AGLAGDSLRF VRRRRWLRGA GLVFSLAGLS GLVIGWGHYY QHNLVALQAV EARAEALADL RPAQEHLDDP SGQHLVPALD ELREVAGVFD GPRGAWAGLA DMGLYQGHRV GDAMDQAYLD ALRYRFLPAL MLGIADEMNT LAPGSEEQLV RLRVLRMLAD ARGREPDRVR DYMADRWQAL LPNRGRLQGR LLEHLDHALV HTDLAGRQAH DPRAAAALAP VAGSIRKAQQ AFSRSPVDER VYTLLKRRGQ DRAGGGVRLD RSVGSGWGTV FRADDDDPDG VTVSPLLTRD GFEQVFLGEL DGATVLALND LWVLGERDDP QFSERDEQRL REALREQYVA DFHAGWRRAL GNIHLTDLES IPHAVIVIDA LLGGGRPLER LLAEIERHTR LYPELPVDDD VARDRLRGSS RYRLAGKLAA PFQPLHALHR KGEEADGDLA AVRAALGALR DHLRAVEQSS EPGRIAYRHA RNRLLQDSGD PVDRVERLAE ELPAPLDGFM AGIAEQSWRL ISGEAIRYLE QQWLDEVIAP FEADLAGRYP LEPNARREVA LEDFERFFAA GGTLDSFFMD KLQPFLDEAP ELLEGPDGRS LLNPRLRTAL ERAERIREAY FGRDGLLDVG FTLAPVSLSG DKRRSVLNVD GQILEYRHGA PQRVAMLWPN SLRQTNESGI TLVPDRVNRS PRSERHQGAW AWFRLLDEAR VVAVGERELR LSFQVDGGEM SYRLTADRTR NPFTRPLTRG YTVPATLYRN GVGGR
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