Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3978 |
Symbol | |
ID | 4255983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4722429 |
End bp | 4723658 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638124667 |
Product | UDP-glucose/GDP-mannose dehydrogenase |
Protein accession | YP_740012 |
Protein GI | 114049462 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.261644 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGTATT CTATCTCAGC AGAAAATGCT AGTTTGGAAG ACAAAATGCC AAACCTTATA AAACCTATGA ACATAGTTGT GGTTGGAATG GGCTATGTCG GCCTATCGAA TGCGGTTTTA CTCGCACAGC AAAACCGTGT TACCGCTATT GATTTGATGC CCGAACGTAT CGAATTAGTC AATGCGCGCA AAGCGACGGT TGCCGATAGC CTGATTGAAG AATATCTACA GCATAAAACC TTAAATCTCA GTGCCACGAC CGATAAAAAC GTCGTTAAAA ATGCCGACTT TGTCATCATA GCCACCCCTA CGGATTACGA CCCACAAACC AATTACTTTA ATACCCAATC GGTAGAAAAT GTCGCGAAGG AAGTGCTCAC CCTGAATCCC GATACGACAA TTGTCATCAA ATCGACTGTG CCCGTTGGTT TTACCGAGGG GCTGAGAAAT AAGCTCAACA GTGACAATAT CTTATTTTCA CCCGAGTTCC TGCGTGAAGG TAAAGCGCTT TACGATAACC TGCACCCCTC GCGCATCATA GTGGGTGAAC GCTCCGAGCG CGCTCAAGTC TTTGCCGATC TGCTTGCCCG CGCCGCAATC AAGCAAGATA TTTCAATTTT ACTCACAGAC AGCACAGAGG CCGAGGCGAT TAAGTTGTTT GCCAACACTT TTTTAGCCAT GCGCGTCGCC TACTTTAATG AGTTGGACAC CTATGCGGAG AGTCGGGGAC TCAATACCCG TCAAATTATC GAAGGCGTAT GTTTAGATCC GCGCATCGGC GATTACTATA ACAACCCTTC CTTCGGTTAT GGCGGTTACT GCCTGCCCAA GGACACTAAA CAATTGCTGG CCAACTATAA TAATGTGCCT AACAATCTGA TCAGCGCCAT TGTCGATTCC AACACCACCC GTAAAGATTT TATTGCCAAC GCCATTATCA GTAAGCAACC CAAACGGGTC GGCATCTATC GTTTGATCAT GAAGTCCGAC TCGGATAACT TCCGCGCCTC GGCGGTACAA GGTGTAATGA AACGCATTAA GGCCAAGGGC ATCGAAGTCG TGGTCTATGA GCCAGTACTC AAGGAAGACG AGTTTTTTAA CTCGAAAGTG ATCCGCGATT TACACGAATT TAAAACCATG TGCGACGTGA TTATTTCTAA TCGTATGGCC AGTGAACTCG AAGATGTCGC CGCTAAGGTG TACACCCGGG ATCTGTTCCA TCACGACTAA
|
Protein sequence | MTYSISAENA SLEDKMPNLI KPMNIVVVGM GYVGLSNAVL LAQQNRVTAI DLMPERIELV NARKATVADS LIEEYLQHKT LNLSATTDKN VVKNADFVII ATPTDYDPQT NYFNTQSVEN VAKEVLTLNP DTTIVIKSTV PVGFTEGLRN KLNSDNILFS PEFLREGKAL YDNLHPSRII VGERSERAQV FADLLARAAI KQDISILLTD STEAEAIKLF ANTFLAMRVA YFNELDTYAE SRGLNTRQII EGVCLDPRIG DYYNNPSFGY GGYCLPKDTK QLLANYNNVP NNLISAIVDS NTTRKDFIAN AIISKQPKRV GIYRLIMKSD SDNFRASAVQ GVMKRIKAKG IEVVVYEPVL KEDEFFNSKV IRDLHEFKTM CDVIISNRMA SELEDVAAKV YTRDLFHHD
|
| |