Gene Shewmr7_3930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3930 
Symbol 
ID4257823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4669236 
End bp4670384 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content50% 
IMG OID638124619 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_739964 
Protein GI114049414 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCAGA CAATTAAACT TGCCTCAGTA ATCAGCGTGG CGTTGTGGAT GGCAGCTTGT 
AGCCCTCAAG AGGATAAAGC CGCTCATGGC GGCGCAGGGC CGCAGAGCAT AGAAGTTGGG
GTAATCAATG TGGCGGCTAC GCCTCAGGTT ATTCAAGTCG AATTACCAGG CCGTAGCAAG
GCGTTCCTCG AAGCCGAAGT GCGTCCTCAA GTGAATGGCA TCATTACCAA ACGTAGTTTT
GTTGAAGGCG GCAATGTTAA GCAGGGCGAG TCCCTCTATC AAATTGATTC TGCGCCTTAC
AAAGCTGCAC TCGTGAGCGC GAATGCCGAT TTAGCCAGAG CGAATGCAAG TCTTGCTTCT
GCCAAAGCAA AAGCCGCTCG TTATCAGCAG TTAGTGAAGA CTAACGCTAT CAGTAAACAG
GATTTCGACG AAGCTGAAGC GGCTTACAAA GAAGCGCTGG CGAGTGTCAC TGTCGCTGAA
GCTGCCATCA ACACCGCGAA AATCAACCTC GAATACACCG AAGTGTTAGC GCCTATTTCC
GGCCGTATCG GTAAATCGAG TGTGACAGCG GGTGCGCTAG TAACGGCTAA CCAAAGCCAA
ACATTGGCGA CCATTCAACA GCTCGATCCA ATCAATGTGG ATATCGCCCA GTCGAGTGCT
CAACTGTTAC GCCTAAAAGC CAAGTTGAAG CAAGGTAAAC TGCAGGCGGC CGATAATGCT
GACGTGCAGT TAGTCTTAGA AGACGGCACT GTTTATGGTC ACAACGGTAA GTTGCAATTT
GCCGAAGTGA GCGTGGATGA GAACACTGGC TCAGTGATCC TGCGTGCAGA GTTTCCGAAC
CCCGATGGCA TCTTATTGCC TGGCATGTAT GTTCGCGCCG TATTGAATAC CGGTACCGAT
CCTCAAGCCA TTTTGGTGCC GCAAAAGGCC ATTAGCCGAA ATGCGAAGGG ACAAGCTGTG
GCTATGGTGG TGAACGATCA AGGCGTAGTT GAAGCAAAAA TTGTTACCAC AGCTGAAGTT
ATCGACAATC AATGGCGTAT TACTGCAGGT TTGGAAGCGG GCGATAAGTT GATTGTGGAA
GGATTACAAA AAATCCGTCC AGGTGCACCA GTCACTCCCA AAGTTATTTC TGAAACCCAA
GCACAATAG
 
Protein sequence
MRQTIKLASV ISVALWMAAC SPQEDKAAHG GAGPQSIEVG VINVAATPQV IQVELPGRSK 
AFLEAEVRPQ VNGIITKRSF VEGGNVKQGE SLYQIDSAPY KAALVSANAD LARANASLAS
AKAKAARYQQ LVKTNAISKQ DFDEAEAAYK EALASVTVAE AAINTAKINL EYTEVLAPIS
GRIGKSSVTA GALVTANQSQ TLATIQQLDP INVDIAQSSA QLLRLKAKLK QGKLQAADNA
DVQLVLEDGT VYGHNGKLQF AEVSVDENTG SVILRAEFPN PDGILLPGMY VRAVLNTGTD
PQAILVPQKA ISRNAKGQAV AMVVNDQGVV EAKIVTTAEV IDNQWRITAG LEAGDKLIVE
GLQKIRPGAP VTPKVISETQ AQ