Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3930 |
Symbol | |
ID | 4257823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4669236 |
End bp | 4670384 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638124619 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_739964 |
Protein GI | 114049414 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAGA CAATTAAACT TGCCTCAGTA ATCAGCGTGG CGTTGTGGAT GGCAGCTTGT AGCCCTCAAG AGGATAAAGC CGCTCATGGC GGCGCAGGGC CGCAGAGCAT AGAAGTTGGG GTAATCAATG TGGCGGCTAC GCCTCAGGTT ATTCAAGTCG AATTACCAGG CCGTAGCAAG GCGTTCCTCG AAGCCGAAGT GCGTCCTCAA GTGAATGGCA TCATTACCAA ACGTAGTTTT GTTGAAGGCG GCAATGTTAA GCAGGGCGAG TCCCTCTATC AAATTGATTC TGCGCCTTAC AAAGCTGCAC TCGTGAGCGC GAATGCCGAT TTAGCCAGAG CGAATGCAAG TCTTGCTTCT GCCAAAGCAA AAGCCGCTCG TTATCAGCAG TTAGTGAAGA CTAACGCTAT CAGTAAACAG GATTTCGACG AAGCTGAAGC GGCTTACAAA GAAGCGCTGG CGAGTGTCAC TGTCGCTGAA GCTGCCATCA ACACCGCGAA AATCAACCTC GAATACACCG AAGTGTTAGC GCCTATTTCC GGCCGTATCG GTAAATCGAG TGTGACAGCG GGTGCGCTAG TAACGGCTAA CCAAAGCCAA ACATTGGCGA CCATTCAACA GCTCGATCCA ATCAATGTGG ATATCGCCCA GTCGAGTGCT CAACTGTTAC GCCTAAAAGC CAAGTTGAAG CAAGGTAAAC TGCAGGCGGC CGATAATGCT GACGTGCAGT TAGTCTTAGA AGACGGCACT GTTTATGGTC ACAACGGTAA GTTGCAATTT GCCGAAGTGA GCGTGGATGA GAACACTGGC TCAGTGATCC TGCGTGCAGA GTTTCCGAAC CCCGATGGCA TCTTATTGCC TGGCATGTAT GTTCGCGCCG TATTGAATAC CGGTACCGAT CCTCAAGCCA TTTTGGTGCC GCAAAAGGCC ATTAGCCGAA ATGCGAAGGG ACAAGCTGTG GCTATGGTGG TGAACGATCA AGGCGTAGTT GAAGCAAAAA TTGTTACCAC AGCTGAAGTT ATCGACAATC AATGGCGTAT TACTGCAGGT TTGGAAGCGG GCGATAAGTT GATTGTGGAA GGATTACAAA AAATCCGTCC AGGTGCACCA GTCACTCCCA AAGTTATTTC TGAAACCCAA GCACAATAG
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Protein sequence | MRQTIKLASV ISVALWMAAC SPQEDKAAHG GAGPQSIEVG VINVAATPQV IQVELPGRSK AFLEAEVRPQ VNGIITKRSF VEGGNVKQGE SLYQIDSAPY KAALVSANAD LARANASLAS AKAKAARYQQ LVKTNAISKQ DFDEAEAAYK EALASVTVAE AAINTAKINL EYTEVLAPIS GRIGKSSVTA GALVTANQSQ TLATIQQLDP INVDIAQSSA QLLRLKAKLK QGKLQAADNA DVQLVLEDGT VYGHNGKLQF AEVSVDENTG SVILRAEFPN PDGILLPGMY VRAVLNTGTD PQAILVPQKA ISRNAKGQAV AMVVNDQGVV EAKIVTTAEV IDNQWRITAG LEAGDKLIVE GLQKIRPGAP VTPKVISETQ AQ
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