| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3738 |
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| Symbol | |
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| ID | 4257601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4446610 |
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| End bp | 4447296 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638124426 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_739775 |
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| Protein GI | 114049225 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.605712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0272703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACCGAA TCATAGCCGA TGAGGCTGAT TTTCTTGTTA TTTCTAAATC GCCGAATGTG
CATTTTCACA GTCAAGATGG CACTGCGGGT GTCGTTGCGC AGCTGGAGCA GGATTTAGGG
ATAAAACTCT TTGCCGTGCA TCGGCTCGAT ACGCCGACCT CTGGGCTGTT ACTGTTAGCC
AAACATCCAG CGGCTGCGCG GCAGTTGACT GAACTTTTTA GTGCCCATCA AGTGCAGAAA
TACTATCTTG CGCTCGCCAA AGGCAAGCCG AAGAAGAAGC AAGGCTGGGT GATTGGCGAT
ATGGCTAAAT CCCGCCGAAG CATGTTTAAG TTGCTGAGAA CCAAAGATAA TCCCGCGACA
ACCCAATTCT TCTCCACCAG TGTTGGTGAT GGACTCAGGC TTTATTTACT CAAACCCCAC
TCGGGTAAAA CCCATCAGTT GCGTGTCGCC CTCGCTAGCC TTGGCGTGCC GATTTTGGGC
GATGCCCTCT ATGGCTCTGA TATGGCCGAT CGTTGTTATC TGCATGCCTA TTGCCTGCAT
TTTCGTTATC AGCATGAGGA TGGCCGCTGG CAGGATTATG CGTATCGCGA TATGCCAGAG
CAGGGCGAGG TCTTTTCAAC ACCAGCCGTA GTTGAGACAC TCAAGCTTTG GCAAGCCCCC
GAGTCATTAG ACTGGCCCGA GCGTTAG
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| Protein sequence | MYRIIADEAD FLVISKSPNV HFHSQDGTAG VVAQLEQDLG IKLFAVHRLD TPTSGLLLLA
KHPAAARQLT ELFSAHQVQK YYLALAKGKP KKKQGWVIGD MAKSRRSMFK LLRTKDNPAT
TQFFSTSVGD GLRLYLLKPH SGKTHQLRVA LASLGVPILG DALYGSDMAD RCYLHAYCLH
FRYQHEDGRW QDYAYRDMPE QGEVFSTPAV VETLKLWQAP ESLDWPER
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