| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3733 |
|---|
| Symbol | |
|---|
| ID | 4254873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 4441542 |
|---|
| End bp | 4443713 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638124421 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_739770 |
|---|
| Protein GI | 114049220 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000345554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000038397 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA AAACCTCGTT TGTTGCCCTC GCCGTATTTG CGGCCCTCAC CCAATCCGCA
GCGGCTCAAG AAGCTCCTGA TACGGGAACG AATAAGAATA AAGACATCGA AAAAATCACT
GTCACTGCGA GCCGCATGGA TAAATCGCCA AGCTCTATTC CCAATACAGT GACCATTATC
GACCGTGTGC AACTCGAAGA GCAGTTCCGC ACCACTAAAG ATTTGTCGAC TATTATCGGT
AACTTAGCAC CTAGCTTTTC ACCCAGCCGC CAGAAGATGA GTAACACGGG CGAAACCCTG
CGTGGCCGCC CGCCCTTAAT CATGATCGAT GGCGTCCCCC AATCCAACCC ACTGCGTAGT
GGTGGTCGTT CGGGACAGAC TATCGACCCT GCGATGATCG AGCGTATCGA AATTATTCAC
GGCGCCAATG CGATGCACGG CTTAGGCGCA CAGGGCGGTA TTATCAACTA CATCACCAAA
AAGCCCACGG GTGATAACCA GCACGTCACC AGCTTTGATG TCACTGTGCC TGACTCCCTC
AAATCTAATG GCGTGAGTTT TGGTGCTAGC TATGCGTTTT CGGGCGAATC CGAGCTGATC
GATATGTTGG GCTCGGTGAG CTATCGCAAT AACGGCGTGT ACTACGATGC AAACCACGAT
GTGATTGGGG TGGACACGAC GCAAGGCGAG TCCATGGACA GCCAGAGCAA AGACTTCTTT
ATCAAACTCG GCCATAACTT TGCCGAGTCG CGCTTAGAGC TGATGGTTAA CCATTACAAC
ATGGAGAACA ATGGCGATTG GATGCCGGTG AAAGGCGATA TCACCACTGG CAAACCAACG
GGCGCAATCG AAGAAAAACA ACCTTGGGAA GCGGCCAACA ACCAAGTCAC GACGACTAGC
CTCACTTACA CCCACGAGAA TATTGCTGGT CAACAGCTGA GTATTCAGTT GTTTAATCAA
GATTTTGAGG CCGTATATGG CGGTGGCTGT AACAAGACCT TCTACGATCC TGCGTTGGCC
AATAACGACA ACCTAGTACA ATGCGAAGGC CCTAAAGGCG AGAGTTGGTA CTATGAGCAA
TCGCGTAACT CCTCGGTCAA ATGGGGATTA AAGACCTCGT TAATTGCCAA AAATATTGCC
GATACGGGTA TCGACGCCGC CTATGGTATC GACCTGTTCC GCGATACCAC AGAGCAGGAT
TTAGTGCAGA CGGGTCTGTC GTGGGTACCT GAAAGCACCT ATGACAACTT CGCGCCCTAT
TTGCAGTTAG ATTATGATTT AATTACCGAT CTAACCCTAT CGACCGGCGT ACGCTACGAG
CACGCTAAGC TCAATGTCGA TGACTACAAG ACACTCTACG GCGCGGGAAA TAAACAAATC
GAAGGGGGCG AAGCGAGTTT CGACGAGACC CTATTCAACA TAGGTATCTC CTACAAAATC
ACTCCAGATA TCCGCGTTTA CACTAGCTAT AACCAAGGTT TTGGTATGCC AGATATCGGC
CGCATTCTAC GCGACGGTAA CAGCTTCCCT GGCGCCAATC CTAGCATTAG CGACTCTCTA
TCCCTTGCAC CGATTGTGAC GGATAACGTG GAGTTTGGCG CCGATTATCA AGGAGAATAC
TTAAGCGCTA AGATTGCCTA CTACCGTTCG GCAACGGATT ACGGTGCGCG TTTAGCCTTA
AACAGCGACG GCTTCTACGA TGTCAAACGT GAGAAGAGCG TGATCGATGG TATCGAAGCC
AATATCACCG CCTACCTGAC CAGCAACGAC GATCTGGGCA TGAATCTAGC GATTCAGCGT
GGTGAATATG ATTCGAATGA TGACAACAAC ACAGATACCG ATCTCGATGG TGCCAACATT
TCACCGAATC GTATCAACCT GTTCTGGACC CATAATTTCG ATAACGAAAT GTCGACGCGC
GTACAGGCAA ACTACTTTAT GGACCGTGAT TTCGAAGATG CCACAGGTGA AAAATATGCC
GAGTTTAACG GCTACACCAC TGTCGATGCG TCATTCTCAA TGCCGCTCTA CACTGGCACC
TTAACCTTAG GCGTGCAAAA CCTGTTGAAT AAGGATTATT TCAACTACTA CTCACAAACT
ATGGGTACCA ATGATCGTTA TTTCAAAGGC ATGGGTCGTA CCGCTACTAT CGGCTATACA
GTCGCATTTT AA
|
|---|
| Protein sequence | MTFKTSFVAL AVFAALTQSA AAQEAPDTGT NKNKDIEKIT VTASRMDKSP SSIPNTVTII
DRVQLEEQFR TTKDLSTIIG NLAPSFSPSR QKMSNTGETL RGRPPLIMID GVPQSNPLRS
GGRSGQTIDP AMIERIEIIH GANAMHGLGA QGGIINYITK KPTGDNQHVT SFDVTVPDSL
KSNGVSFGAS YAFSGESELI DMLGSVSYRN NGVYYDANHD VIGVDTTQGE SMDSQSKDFF
IKLGHNFAES RLELMVNHYN MENNGDWMPV KGDITTGKPT GAIEEKQPWE AANNQVTTTS
LTYTHENIAG QQLSIQLFNQ DFEAVYGGGC NKTFYDPALA NNDNLVQCEG PKGESWYYEQ
SRNSSVKWGL KTSLIAKNIA DTGIDAAYGI DLFRDTTEQD LVQTGLSWVP ESTYDNFAPY
LQLDYDLITD LTLSTGVRYE HAKLNVDDYK TLYGAGNKQI EGGEASFDET LFNIGISYKI
TPDIRVYTSY NQGFGMPDIG RILRDGNSFP GANPSISDSL SLAPIVTDNV EFGADYQGEY
LSAKIAYYRS ATDYGARLAL NSDGFYDVKR EKSVIDGIEA NITAYLTSND DLGMNLAIQR
GEYDSNDDNN TDTDLDGANI SPNRINLFWT HNFDNEMSTR VQANYFMDRD FEDATGEKYA
EFNGYTTVDA SFSMPLYTGT LTLGVQNLLN KDYFNYYSQT MGTNDRYFKG MGRTATIGYT
VAF
|
|---|
| |