Gene Shewmr7_3662 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3662 
Symbol 
ID4256160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4360612 
End bp4362471 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content56% 
IMG OID638124350 
Productdihydroxy-acid dehydratase 
Protein accessionYP_739699 
Protein GI114049149 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism 
COG ID[COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase 
TIGRFAM ID[TIGR00110] dihydroxy-acid dehydratase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAAGT TACGTTCAGC AACCAGTACC GAAGGCCGCA ATATGGCGGG TGCCCGTGCG 
CTATGGCGCG CCACAGGGGT GAAAGACAAT GATTTTGGTA AGCCGATTAT TGCAATTGCC
AACTCCTTTA CTCAGTTTGT TCCCGGCCAT GTGCATTTAA AGGATATGGG TTCTCTGGTG
GCGGGCGCCA TCGAAGAGGC GGGCGGTATT GCCAAGGAAT TCAACACCAT CGCCGTCGAT
GATGGTATCG CCATGGGCCA CGGTGGCATG CTCTACAGTC TGCCTTCGCG GGAGCTTATC
GCCGATAGCG TCGAGTATAT GGTCAATGCC CACTGCGCCG ATGCGCTGGT TTGTATCTCT
AACTGCGACA AAATCACCCC CGGCATGTTG ATGGCGGCGC TGCGCCTCAA TATCCCCGTG
GTGTTTGTGT CGGGCGGGCC GATGGAGGCG GGTAAAACCA AACTGTCGGA CAAGCTTATC
AAACTCGATT TAGTCGATGC CATGGTGGCG GCGGCAGACT CGAGTGTGAG CGATGAAGAT
AGCGCTAAAA TCGAACGTAG TGCTTGCCCT ACATGTGGTT CCTGTTCGGG CATGTTTACC
GCTAACTCGA TGAACTGTTT AACCGAAGCT TTAGGTCTGT CGCTGCCGGG CAACGGCTCC
ATGCTCGCGA CCCATAGCGA TCGCCGCGAA CTGTTTTTAG AAGCAGGCCG GCGCGTAATG
GCGCTGACCA AACGTTACTA CGAACAAGAT GATGTCTCGG CACTGCCGCG CAACATCGCC
AGCTTTAAAG CCTTTGAGAA CGCCATGGCG CTGGATATCG CCATGGGCGG TTCGTCCAAT
ACTGTGTTGC ACTTATTGGC TGCGGCGCAG GAGGCGGACG TGGCATTCAC TATGGACGAT
ATCGACCGTA TGTCGCGCCA AGTGCCACAT CTGTGTAAGG TGGCGCCGTC GACCGCTAAA
TACCATATGG AAGATGTTCA CCGCGCTGGT GGCGTGATGG GGATCTTAGG CGAGCTAGAC
CGCGCCGGAC TGCTGCATAC CGATGTGCCA CATGTTGCCG CCGATGCGGG GGGCAATCTC
AAGTCAGTGC TCGCCAAGTA CGATGTCATG CAAACCCAAG ATGACAAAGT AAAACAATTC
TTTATGGCGG GGCCTGCGGG CATTCCTACC ACTAAAGCCT TTAGCCAAGA CTGCCGCTGG
CCATCGCTGG ACGATGACAG GCGTGAAGGT TGTATCCGTA GCCGCGAATT TGCCTTCAGC
CAAGAGGGCG GTTTGGCCGT GTTATCGGGC AATCTGGCCG ACAATGGCTG TATCGTTAAA
ACTGCCGGTG TGGATGAGTC TAACCTGACC TTTACTGGCA GCGCTCGGGT GTACGAAAGC
CAAGATGACG CTGTCGCTGG CATTTTAGGT GGCGAAGTGG TGGCGGGTGA TGTGGTGGTG
ATTCGTTACG AAGGGCCAAA AGGCGGCCCA GGTATGCAAG AAATGTTGTA CCCCACCAGT
TACTTAAAAT CCCGTGGCTT AGGCAAGGCC TGCGCGCTGA TCACTGATGG CCGCTTCTCT
GGTGGAACTT CCGGTTTATC CATCGGCCAT GTGTCGCCTG AGGCGGCGGC GGGCGGCACG
ATTGCCTTGA TTGAAAACGG CGATCGCATC GAAATCGATA TTCCTAAGCG CAGTATCAAG
CTTGCTGTGA GTGATGCTGA ATTGGCTGCG CGCCGTGAAA CCATGCTCGC CCGTGGGCCA
ATGGCGTGGA AACCGCTTTC GCGTCAGCGT TATGTGTCGA TGGCGCTCAA AGCCTACGCC
ATGCTTGCCA CCAGTGCCGA TAAGGGCGCG GTGCGCGATC GCAGTAAGTT GGAGGACTGA
 
Protein sequence
MPKLRSATST EGRNMAGARA LWRATGVKDN DFGKPIIAIA NSFTQFVPGH VHLKDMGSLV 
AGAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKLI KLDLVDAMVA AADSSVSDED
SAKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHSDRRE LFLEAGRRVM
ALTKRYYEQD DVSALPRNIA SFKAFENAMA LDIAMGGSSN TVLHLLAAAQ EADVAFTMDD
IDRMSRQVPH LCKVAPSTAK YHMEDVHRAG GVMGILGELD RAGLLHTDVP HVAADAGGNL
KSVLAKYDVM QTQDDKVKQF FMAGPAGIPT TKAFSQDCRW PSLDDDRREG CIRSREFAFS
QEGGLAVLSG NLADNGCIVK TAGVDESNLT FTGSARVYES QDDAVAGILG GEVVAGDVVV
IRYEGPKGGP GMQEMLYPTS YLKSRGLGKA CALITDGRFS GGTSGLSIGH VSPEAAAGGT
IALIENGDRI EIDIPKRSIK LAVSDAELAA RRETMLARGP MAWKPLSRQR YVSMALKAYA
MLATSADKGA VRDRSKLED