Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3633 |
Symbol | dapF |
ID | 4256131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 4312063 |
End bp | 4312890 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638124317 |
Product | diaminopimelate epimerase |
Protein accession | YP_739670 |
Protein GI | 114049120 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.476258 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGT GTCGGTTTCG ATCAACTTTT ACTGGTTGAG CCGCCCTATG ATCCCGATTT GGATTTTCAC TATCGTATCT TTAATGCCGA CGGTGGTGAG GTCGAAAACT GCGGCAATGG CGCCCGTTGT TTTGCGCGCT TTGTTCGTAA TAAAGGGCTG ACGAATAAGA ATAAAATTCG TGTAAGTACC TCGGCGGGTA AGATGACTCT GCGCCTCGAA CGTGACGGTA CTGTCACTGT GAATATGGGC GTGCCTGTGC TCGACCCTAG CCAAATTCCT TTCAAAGCCA AGAAGGCCGA AAAAACCTAT CTGCTGCAAA CGTCGCAACA AACCTTTTTA TGTGGCGCGG CGTCCATGGG TAACCCCCAT TGCGTGCTCG ATGTGGAAGA TGTTGCTAAC GCTAATGTCG CCGAGATTGG TGCACTGCTC ACTAAACATG AGCGTTTTCC GCGCGGGGTA AACGTCGGCT TTATGCAGGT GGTGAACTCG GGCCATATCA AGCTTAGAGT TTACGAGCGT GGTGCGGCCG AGACCTTAGC CTGTGGTACT GGGGCTTGTG CTGCAGTGGT GGTTGGGCAA ATCCAAGGCA AACTCGACCA ACAGGTACGT GTCGACTTGC CGGGTGGCAC CTTAACCATC AATTGGGAAG GTGAAGGCAA ACCCCTGTGG ATGACGGGGC CAGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
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Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG VGFDQLLLVE PPYDPDLDFH YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG VPVLDPSQIP FKAKKAEKTY LLQTSQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL TKHERFPRGV NVGFMQVVNS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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