| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3589 |
|---|
| Symbol | |
|---|
| ID | 4257974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4256351 |
|---|
| End bp | 4258921 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638124273 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_739626 |
|---|
| Protein GI | 114049076 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTG GCAACAAAAT ATTGGTATTT ATTGCAGGAT TCTGTCTACC AGCAGTTGTG
CTTGTGTCAT ATTGTCTTGG CTATTGGTTC GACCATAGGG TCGAGTTGCT GCGGCAGGAC
AATATCCAGC ATGAACTCAC AAACGTTCAA CAGCAGTTTC TTATCGATAT CGACCGTTTA
AGTTTTCTCA CCCAAATCTA TGCCTCTCCG CTGTCTCGAG TCGATGGCGA ACTGCTGCAA
TCGATAGAAT CATCATGGCT TGAGAGTGCC ATGTCCGCCA ATCTGCATTG GTTTATTCTG
CAAGCTGGAC AGCTGCAGAG TGTCCTCGCT AATACTTCCA GCCTTGCATT ATCGACCCAA
CAAGAGATTG CCGATGCGGT GCTCGCCGCC AATAAACCAA AGGTTGCAGG GGCTTATCTT
GCCGGAGATA CAGGCTTAGT CGTCACCGCG GTTGCCGTCG CGCCCGAGGA ATACGTGCTC
TTGGTGCGGC AGATATCGGC GCAGGATTTA TTGGAATATG CCCAAGCACC ATTAGTCACT
CAAGTGTTGA TGAGCCGCAG CAACACCACG GTTGCTAAAG ATTACCTCAG CTTTGTGCCC
ATCCCGAGTT TATTGAATAA CGCGCCATTG TATCTGCAGG TGCAGTTTTC TACTGATCCC
TTGCAGGAGG TTAAGCTCGA TCTCGATTGG GTTTCAGTCG GTATTATTTT ACTCGGTGTA
TTAATTGTGG CGCTGGGCTA CATTTGGCTC AGAACTGGTC TTTTAAAGCC GTTTCAGAGC
ATGATGCAGC AGTTGGCATT GGTCGATCCT ATGGCAAGCG TTTATCGGCC TGTGAGCGGC
GAAGGTAACG CCGAGTTAGA AGTGCTGGCA AGCCGTGTAA ACAGCTTACT TGCTCGCATA
TATCAGCAGA AAGAACGCGG TAAAACTACC CTAGAATCGA TTGCCGAGGC GGTGATCCTG
ACCGATATCG ATGCCAAAGT GATCTACATG AATCCCAAGG CCGAGTCCTT GCTCGATGTT
GCCAGCTGTT ATGCCGTTGG CCAGAGCCTA GCATCGTTAT TAAAAGCGGG GGAGCAGTTA
AATCAAGCGG TATTCCAGTG TATGCGCCTA GGTGAGACTA CGCCTCAAGT CGCTAAAATC
AAGTTATTAA CCGCAACACC ACGGATTATC GAACGCAGCA TTAGTAACGT GTTGAACCAC
GATAAAGAGA TTACCGGCAC TGTGGTGGTA CTGCGGGATA TTACCCAAGA AGAGCTGCTC
AAGCGTCAGC TACAAAAACG CGCCAACTTC GATGGCATTA CCGGCTTGCT TAATCGGCAA
GCCTTTGAAG AGCAGTTACC GCAGTTCGCT GGTCAGGCTA AGCGCTTAGC CGTGTGTTAT
CTGGATTTAG AGCAGTTTAA GCTGATAAAC GATAGTTGTG GTCATACCGC TGGCGACCGC
ATGTTGGCCA TGGTGGCGCG GGCGATTCAA TCCTGTCTGG GGCCGCAGGC ATTATTAGCC
CGTTTAGGTG GCGATGAATT TGGCTTGGTC ATTTGCGACA GCACAGCCTT GGCCGTGGCG
CAGCAGCTAA AACAGATTAT TGCGCAGGTA TCGCTGCAAG TGCTGCATGA TAAAAACTGT
AACTATAAAG TCGGTTTGAG TATCGGTGTC GCCTTTGGAC GAGCGCCCTA TATCAATGCG
TTAGAGCTAC TCAAGGATGC GGATATTGCT TGTATCGCTG CCAAAGCCAA GGGCACAAAC
CAAATCCATT TTTATGATGA TAAAGATAAA GAACTGACCT ATCAGCGCAA TGCCCCAAAA
TGGGCGGTGC GTATTGCGCA AGCGATTGAG GAAAATGAAC TCCTGCTCTA CTACCAACCG
ATCCGCGGTT TAGGGGCGAG TTCTAAACGG CAACGGATGG AAATCCTGCT CAGGATCCAA
GAACCCTGCG GCCGTATTTT GGCTCCAGCG CAGTTTATTG CCGCTGCTGA GCGCTTTAAG
TTGATGCCTG AAATCGATAA AGAAGTGATA CGTAAAGCTT TTTTATGGCT ATCCTTAAAT
CCTCAGCTTT GGCCGGATCA CTGTATTTCA ATCAACCTTT CAGGCAATAG CTTAGGCGCC
GAAGGCATGG TGGAATATAT CGCTCAGCAG CAACATATTT TCGATATTCC GAGCCAGTGT
GTTTGCTTTG AAATCACCGA AACCACTGCG ATTCAAAATC GCCACCGCGG CATGGAGATG
CTTAGGCAGC TGCGTAAACT CGGGTTTTCC TTTGCATTGG ATGATTTTGG AAGCGGCTTT
GCGTCCTATG GTTATCTGCG GGAGCTACCA GTGGACTATG TCAAAATTGA TGGTTGCTTT
GTGAAAAACC TTGCGGTTAA TGCCAAGGAT TATGCCATCG TCAAATCGAT TCAGGACGTG
TGCCGAGTGA TGGGGATTGA GACCGTCGCC GAATTTGTGG AAAACCAAGA TATTATCGAT
AGATTACAGG TAATTGGTAT TAACTATGCT CAAGGTTATG CGATAGGACG GCCGCAACCT
TTGACCAGTT ATTGCGAACC GTTTGCAGTA CCGCAAGCAC AACGCGCATA A
|
|---|
| Protein sequence | MHIGNKILVF IAGFCLPAVV LVSYCLGYWF DHRVELLRQD NIQHELTNVQ QQFLIDIDRL
SFLTQIYASP LSRVDGELLQ SIESSWLESA MSANLHWFIL QAGQLQSVLA NTSSLALSTQ
QEIADAVLAA NKPKVAGAYL AGDTGLVVTA VAVAPEEYVL LVRQISAQDL LEYAQAPLVT
QVLMSRSNTT VAKDYLSFVP IPSLLNNAPL YLQVQFSTDP LQEVKLDLDW VSVGIILLGV
LIVALGYIWL RTGLLKPFQS MMQQLALVDP MASVYRPVSG EGNAELEVLA SRVNSLLARI
YQQKERGKTT LESIAEAVIL TDIDAKVIYM NPKAESLLDV ASCYAVGQSL ASLLKAGEQL
NQAVFQCMRL GETTPQVAKI KLLTATPRII ERSISNVLNH DKEITGTVVV LRDITQEELL
KRQLQKRANF DGITGLLNRQ AFEEQLPQFA GQAKRLAVCY LDLEQFKLIN DSCGHTAGDR
MLAMVARAIQ SCLGPQALLA RLGGDEFGLV ICDSTALAVA QQLKQIIAQV SLQVLHDKNC
NYKVGLSIGV AFGRAPYINA LELLKDADIA CIAAKAKGTN QIHFYDDKDK ELTYQRNAPK
WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEILLRIQ EPCGRILAPA QFIAAAERFK
LMPEIDKEVI RKAFLWLSLN PQLWPDHCIS INLSGNSLGA EGMVEYIAQQ QHIFDIPSQC
VCFEITETTA IQNRHRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF
VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQDIID RLQVIGINYA QGYAIGRPQP
LTSYCEPFAV PQAQRA
|
|---|
| |