| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3568 |
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| Symbol | |
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| ID | 4257953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4232591 |
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| End bp | 4233547 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638124252 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_739605 |
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| Protein GI | 114049055 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCA ACAAACGTTT TATCGCCGTT GGCGCAGCAT TAACGCTCTC ACTCAGCGCA
GCCTCAATGG CGGCCGCACC TGCCTTTATC AATATCTTAA CTGGCGGCAC CAGTGGCGTG
TATTACCCCA TTGGTGTGGC ACTGTCGCAG CTCTATGGCT CAGGCATTGA AGGCGCCAAA
ACCTCAGTGC AAGCCACTAA AGCCTCGGTT GAAAACCTCA ACTTGTTGCA AGCGGGCCGT
GGTGAATTGG CCTTAGCCTT AGGCGATTCT GTGGCTGCTG CCTATCAAGG CGATGCCGAT
GCAGGCTTTA AAAAGCCATT AGATAAGGTG CGCGTGCTCG CAGCCGCTTA CCCTAACTAC
ATTCAAATTG TGGCCAATAA GGAATCTGGA ATCAAAACCT TAGCCGATTT GAAAGGCAAA
CGTATTTCTG TCGGTGCGCC TAAGTCAGGT ACTGAACTCA ACGCGCGCGC CATTTTTAAA
GCCGCAGGTT TAAGCTACGA AGACATGGGC AAAGTGGAAT TTTTACCCTA TGCCGAATCG
GTCGAGCTGA TTAAGAACCG TCAGTTAGAT GCGACCTTAC AATCTTCGGG CTTAGGTATG
GCAGCGATCC GCGATTTAGC CGCGACTATG CCAATCAACT TTGTGGAAAT CCCCGAAGAT
GTGATCGGCA AAATCAATAA CCCAGCCTAT CAACATGGTG TGATCCCAGC AGCCACCTAC
GAAGGCCAAA CCGCCGATGT CTCTACGGTT GCGATTCAAA ACCTCTTTGT GACTCAAGCC
GGTGTGTCTG ACGATTTAGC CTATCAGATG ACTAAACTGA TGTTTGAGCA TTTAGATCGC
CTCGGCAACG CCCACTCAGC GGCGAAAGCC ATTCAATTAG ACAAGGCAAC CAAAAACCTG
CCTGCGCCAC TGCACCCAGG TGCTGAGCGT TATTTCAAAG AAGTTGGCGC ACTCTAA
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| Protein sequence | MKINKRFIAV GAALTLSLSA ASMAAAPAFI NILTGGTSGV YYPIGVALSQ LYGSGIEGAK
TSVQATKASV ENLNLLQAGR GELALALGDS VAAAYQGDAD AGFKKPLDKV RVLAAAYPNY
IQIVANKESG IKTLADLKGK RISVGAPKSG TELNARAIFK AAGLSYEDMG KVEFLPYAES
VELIKNRQLD ATLQSSGLGM AAIRDLAATM PINFVEIPED VIGKINNPAY QHGVIPAATY
EGQTADVSTV AIQNLFVTQA GVSDDLAYQM TKLMFEHLDR LGNAHSAAKA IQLDKATKNL
PAPLHPGAER YFKEVGAL
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