| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3548 |
|---|
| Symbol | |
|---|
| ID | 4255854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4205176 |
|---|
| End bp | 4210221 |
|---|
| Gene Length | 5046 bp |
|---|
| Protein Length | 1681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638124232 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_739585 |
|---|
| Protein GI | 114049035 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTTT TTGGCATTTC ATCGGGTCAT TTATACAGGA CCATTCGACA AGTCTTGGCG
GTCATTTGCT GTCATAAACA ACAAATCCAT CTTGGGAAGC GTATCGCTTC TCTGGGATAT
GTTGTTTGCC TAGTGAGTTT ATTCGCCGTG CATTTTGGGC TATTCCCTAA TATGGCAATG
GCAAACGAGG TCTCACAACA ACAGTATCGT CAAGCGTTAT CTCAGTTGAC GCCCGCGCAA
AAGCTCGCCC ATAGCCATAG GGTGAGTATG ATCTTGGAAT CGGATAGACC CTTTTGGCAT
CAAATTGCTA AGTTTGCCAA GATTGCGGCG ATGGATCTCA ATATCCAGCT CGACGTTGTT
TACGGTGATG GCACCCCGGA AACCCTACTC AAACTGGGCC ATGAGGCGAT AGATAACAAG
GTCTCTGGGA TTGTATTTGT TCCCGTTTCG GGTATGGGGC AGGAACTCTT AGCCGAGGCT
AATCAGCAGC ATATACCTGT TGTGACCATC AATTCTGAAT TTAAACAAAG CTCATTATCC
CTCAGGACCC AAAACCCCAA CTGGATTGGC CGAGTAGCGA TAAACAACAC CAACCTCGGA
CAGAGTCTGC TCGAAAAAAT GTTTGAGCAT GAAAACTCTG CCGAGCGGAT GAATGTGCTG
TTACTCGCGG GAAACAAAGA TAACCTCGAT GTGCAAAAGC GTACCGCTGA ACTGAAAAGT
GCGGTGAACA AGCAATTTGC CAATGCCAAG CTCAAAGTGG TGAATACCGA TTGGACGGCC
TCGGCGGCGC GTGATGCTTA TCTAAAAGCC ATAAAACAAG ATCCTAGTAT CAACACTGTG
ATTGCCATGG ATACCACAAT GGCCTTGGCG GTGAGTCATG AGGCCGAAGC CAGTACACTA
AGACCCATTC CCCATATTGC CTCGTTAAGT TGGGATTATC AGCTCGCTCA AGGGATCCAA
AATGGCACTA TCGCCGCGGG TGTCGGTGGC GTGGAGTTTC AGGGCGCATT TAGCCTGGTG
CTGCTGTTCG ACTACTTAAA CGGAGTGGAT ATTCGTTCCA AGGGGGCGGA GTTTTTAATC
GCGCCCTTGA TCATCAGCCC GAATAACTAT AACGATTACT ACGAGTTACT CGATTTTGAC
TCACTACAAC CCGATTTTGC CCGTGTCTCG TTGGCGCTCA ATAAAAATCT GTTTTTGGTC
GATTTTCGCT TAGGTGCACT GATCCCCAAT ATGGATTTGC ATCGCTTTAT GAGCATATTA
ACCGTTGAGG AAAGGGCCTT TATCAACAAC AACCCCATAG TGAGGGTTGG CGTGGATCCC
CATTCTGCTC CAATTGATTT TATTGATGAA AACGGTATTC ACCGCGGCAT GATGGCGGAT
TATCTCGCCG AAATCAGCCG TGTGGTGCCA CTGATTTTTC AGACCTATAA CGAAGGTTCT
TGGCAGCAAG CGGTCGAGGA ATTTAAACAC CGTAAAGTGG ATATGTTATC TCTGGCGTCG
GCGGGCTCTG GGCGTGAGCA GTGGATGCTA TTTACCGATC CCCTAAATCA GTATCCGCCC
GTGATTGTGA CCCCTATTGA GGGGACACAC TTTAATAGTC TTGAAAGCCT CAAGGGTAAG
TCGGTCAGCG TGGTTGCTGG CGACATTACT CAAAACCATT TGCTTGATGA CTATCCTGAT
ATTGTACTGG TCCCCGTCAG CAACTTGGAG CAGGCCTTAA CGGCGGTGGA TAAGCGTCAG
GTGGATGCGG CCTTTGTAAA TTTCCCGAGT ACCGCACACT TACTCCAGTC CCCCCCCTTT
AATCGCCTCC AGATAACGGC CGCCACTGAC TATCGTTTTG GCATTTCTAT GGGAGTGCGT
AAGGACTGGC CCGAGCTGCA GAGCATCTTA AACAAGGCAT TTGCACAAAT TCCGCAGGAT
AAGGCACGCG AAATTCAGCA CCGTTGGGTG AATGTGCAAT ATGACCTGGG GTTAAAGAAG
CAGCAAGTGT TTAACTGGGC GGTGCGGATT GCCGTGGCGG TCTTGCTGGT GCTGTTTCTT
TTTAGCTTGC GCAACAGGCG GTTAAATAAG GATATCGCGC AGCGGATCCA CACAGAACAG
CAGCTAAGCC TGAGCATGCA CAAGTTTCAG GCGCTGTTCG ATTCTGCGGT CGATGCCTGT
GTCATTACCG ATAGCCAAGG GGTGATCATT GAATGTAACA GTGCGTTGCT GTCATTACTT
AAGTATCAGA GTAAAGACCA ACTCATTGGT CAGCGCACCT TAGTCTATTA CCCCGAACAG
AGCGACGATG CTTTAAATCA GAGCGTGTTT GAGCGGCGTC TGCAAACCGT GCTAGACCAA
GGGCAGCTTA AGTTTGAATC CGAGTTTATT ACCACTGCGG CAGAGATCAT TCATGTTGAT
GTGACGCTTA AGCGAATCGA GCTCAATGGC TCCCTGTTTG TGCTCGGGTC ATACCACGAT
CTGTCGGAAC GAAAATTGAT GAATGCCTTG CTCGAGCGCG AGCGGGATCT GCTTAAAAAC
GTATTAGGCA GAAGTCCGAT CGGCGTCTGG ATCTGTGTTG AAGGGGTTTG CCGTTATGTG
AATGAGCAGA TTACCGAGAT GACGGGGCTA GAAGTCGGCC AATCTGTTTA TCGGATTTTT
GTGCAGCCCG AAGACTACCG TTGCCATATT CGTGAATTGG ATTTAAGCCA AGACAGTACC
GTATTTGAGA CACAACTGTT TGATGCCCAT GGGCAGCGCC GCGATGTGCT GCTGACCTCT
TATCACACAG TGCAGGATGG CCAAAATGCT AACCTCTGTT GGGCCTTAGA TATTACCGAC
ACTAAGTCGA TCCAGGATGA GTTAGCCATA GCAAAAGATG CTGCCGAGGC GGCTAACCGC
GCTAAGTCGG ACTTTTTAGC CAATATGTCC CACGAGATCC GCACGCCGAT GAATGCCATT
CTCGGCATGT CCTACCTAGT GCTGCAGACG GAGCTGAGCA GCAAGCAACG GGATTATGTG
GGCAAGGTGC ATCAGGCGGC CGGCTCTTTG CTGGGCATAC TCAACGATAT TTTGGATTTT
TCTAAAATCG AGGCCGAGAA GATGGATATC GAATGTACCG TATTCGATCT CGACGATGTG
CTGTCTAACT TGGCCAATGT AGTGAGTTAC AAGGTTGAAG AGAAGAACAT GGCATTTATC
TTCGATCTGC CGCCCGAGTT GCCCCGTTAC TACCATGGTG ATGGCCTGCG TCTGGGGCAA
ATTTTGATCA ACTACTGCAA TAACGCGGTG AAGTTTTCCC ACAACGACAG CAGTGTGGTC
TTGAGTTGTC AGACTCAGCA GCAGGGGGAG CAGGTTGAAC TCACCTTCTG TGTGGAAGAT
TTTGGCATTG GGATCCCCGA GCAAAAACAG GGAGTGTTAT TTGGCTCATT CGAACAAGTC
GATGCCTCGA CTTCACGGGA ATATGGTGGA ACAGGGCTGG GGTTAGCCAT TTGTAAGCGC
CTAGCCCACC TGATGGGCGG CGAAGTGTGG TGCGAGAGCG AGTTAGGCGT GGGGAGCCGC
TTCTATCTCA GGCTCACACT CAACTGTGCC GATACCTATG AGTCTCAGTC GCTATTCGAT
GCCTTAGCGG GCGAAACCGC TAAGCTAGTC GGGCTGCATC CTAGATTGGA AAAGCTGCTC
ACCGAGCATG GGCTGGCGGC TAAGATGCAG GTGGCGGTGG CCGAGACCAA TAGCGTGATT
GAAGAGCTTA AACACTCGAG GACACGCCAG CTGGTGCTCT GTGATTACAG TGCATTTAGC
CCTGAGTTAC TGGATGCGCT GACGGCGAAT CCCGATTCAC GTATGTTGTT GGTTGGTAAC
CTTAGCGATC AGGACGCCCT AAGACCGCTG ATTGAGAATA ACCCAAGGGT GTTGTCACAA
ACGAAGCCCC TGACGCCCAT CGCAATCGGC AATGCCCTGT TATCCCTGCT GGGACATAAC
AATGAGAATG GCAGGCAAGT GCAGCAGGAT CATTCCTTAC ATGCCCTTAA GACTCAGCTC
GCGGGGGCAG AGGTGTTACT GGTAGAGGAT AATCAGCTCA ATCAGGAGCT GGCGGTGGAG
TTGCTGCACC AAGCGGGCGT GAATGTCACT GTGGCTAATC ATGGGCTTGA GGCCATAGAG
CGCATCGAGC AGCAGTACTT CGACTGCGTG TTAATGGATT GCCAGATGCC GGTGCTCGAT
GGTTACGAGG CGACTCGCAG GATCCGCGAA TTGCCTGAAT TTGCCAATCT GCCGATATTG
GCCATGACGG CCAACGCCAT GTCAGGTGAT ATTGAAAAAG CACTGGCGGT AGGAATGAAC
GACCAAATCA CTAAACCTGT GCATGTGAAG GATCTCTACA CTGTGATGGC GCGCAGGATC
ACGCCAAAGC AGCGTAAATC TGTGCCCTTG GTATTAAAGC GAGCGAGCAC GGCCCATAGC
TTGCCGCAGC TCGATGGCTT ACAGACTCAC AATGGTTTGG CGCTTTGCGA TCATAACGAG
TCGCTCTACA GCCATTTGCT GGGCTTGTTT ATCAACACCA GCAAGACACT GCTTGGGCAG
CAACAGCGAG CTTGGCAGGA TGAGAATATC GATGAGCTGC GCTTAAGCCT GCACACCTTA
AAGGGCGTTG CCGCTAATGT GGGGGCGGTG GAGATCAGCC GTCAAGCTGG TGAACTCGAG
CAGCAATGCC ACACGGCGCA GCAGAGTTTT ACCGTGGAGT TACACGAGCA ACTGTTGGGG
CTGCAAACCG AATTACAGCG CCTAGTCACA GGCTTGGAGC TTTGGCATCA ACAGCTCAAC
AGCCAGCATG AAACCACACT GGATGATGAC GCCCTAATTG GGTTGATGGA GCAATTAGAA
AACAGTCTGC TGGAATACAA TACCAACGCT TTGGAATGGG TAAATAAGCT TATCCATGCG
CCGCAGTTTC AGTCCCAGGC GAGTGTGCTT AAACAGTTAA AAATGGATGT TGAACTGTTT
GATTTTGAAC AGGCATTAGC GCGACTGCAC ACTCTTAAAC TGGCGCAGGA GGACGTATGC
AGTTAG
|
|---|
| Protein sequence | MAVFGISSGH LYRTIRQVLA VICCHKQQIH LGKRIASLGY VVCLVSLFAV HFGLFPNMAM
ANEVSQQQYR QALSQLTPAQ KLAHSHRVSM ILESDRPFWH QIAKFAKIAA MDLNIQLDVV
YGDGTPETLL KLGHEAIDNK VSGIVFVPVS GMGQELLAEA NQQHIPVVTI NSEFKQSSLS
LRTQNPNWIG RVAINNTNLG QSLLEKMFEH ENSAERMNVL LLAGNKDNLD VQKRTAELKS
AVNKQFANAK LKVVNTDWTA SAARDAYLKA IKQDPSINTV IAMDTTMALA VSHEAEASTL
RPIPHIASLS WDYQLAQGIQ NGTIAAGVGG VEFQGAFSLV LLFDYLNGVD IRSKGAEFLI
APLIISPNNY NDYYELLDFD SLQPDFARVS LALNKNLFLV DFRLGALIPN MDLHRFMSIL
TVEERAFINN NPIVRVGVDP HSAPIDFIDE NGIHRGMMAD YLAEISRVVP LIFQTYNEGS
WQQAVEEFKH RKVDMLSLAS AGSGREQWML FTDPLNQYPP VIVTPIEGTH FNSLESLKGK
SVSVVAGDIT QNHLLDDYPD IVLVPVSNLE QALTAVDKRQ VDAAFVNFPS TAHLLQSPPF
NRLQITAATD YRFGISMGVR KDWPELQSIL NKAFAQIPQD KAREIQHRWV NVQYDLGLKK
QQVFNWAVRI AVAVLLVLFL FSLRNRRLNK DIAQRIHTEQ QLSLSMHKFQ ALFDSAVDAC
VITDSQGVII ECNSALLSLL KYQSKDQLIG QRTLVYYPEQ SDDALNQSVF ERRLQTVLDQ
GQLKFESEFI TTAAEIIHVD VTLKRIELNG SLFVLGSYHD LSERKLMNAL LERERDLLKN
VLGRSPIGVW ICVEGVCRYV NEQITEMTGL EVGQSVYRIF VQPEDYRCHI RELDLSQDST
VFETQLFDAH GQRRDVLLTS YHTVQDGQNA NLCWALDITD TKSIQDELAI AKDAAEAANR
AKSDFLANMS HEIRTPMNAI LGMSYLVLQT ELSSKQRDYV GKVHQAAGSL LGILNDILDF
SKIEAEKMDI ECTVFDLDDV LSNLANVVSY KVEEKNMAFI FDLPPELPRY YHGDGLRLGQ
ILINYCNNAV KFSHNDSSVV LSCQTQQQGE QVELTFCVED FGIGIPEQKQ GVLFGSFEQV
DASTSREYGG TGLGLAICKR LAHLMGGEVW CESELGVGSR FYLRLTLNCA DTYESQSLFD
ALAGETAKLV GLHPRLEKLL TEHGLAAKMQ VAVAETNSVI EELKHSRTRQ LVLCDYSAFS
PELLDALTAN PDSRMLLVGN LSDQDALRPL IENNPRVLSQ TKPLTPIAIG NALLSLLGHN
NENGRQVQQD HSLHALKTQL AGAEVLLVED NQLNQELAVE LLHQAGVNVT VANHGLEAIE
RIEQQYFDCV LMDCQMPVLD GYEATRRIRE LPEFANLPIL AMTANAMSGD IEKALAVGMN
DQITKPVHVK DLYTVMARRI TPKQRKSVPL VLKRASTAHS LPQLDGLQTH NGLALCDHNE
SLYSHLLGLF INTSKTLLGQ QQRAWQDENI DELRLSLHTL KGVAANVGAV EISRQAGELE
QQCHTAQQSF TVELHEQLLG LQTELQRLVT GLELWHQQLN SQHETTLDDD ALIGLMEQLE
NSLLEYNTNA LEWVNKLIHA PQFQSQASVL KQLKMDVELF DFEQALARLH TLKLAQEDVC
S
|
|---|
| |