| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3484 |
|---|
| Symbol | |
|---|
| ID | 4255438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4127016 |
|---|
| End bp | 4127921 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638124169 |
|---|
| Product | alpha-L-glutamate ligase |
|---|
| Protein accession | YP_739522 |
|---|
| Protein GI | 114048972 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG GTATTTTATC CCAGTTCCCT GAATTGTATT CCACCCGACG TTTAGTGGCG
GCCTGTGAGA GCCGTGGCCA TGAAGCTGTG GTGATTAATA CCTTGAATTG CTATATGAAT
ATCAACTCTA TCAAACCGAG CATTCACTAT CAGGGCCAAG AATTAACTGG ATTCGATGCC
ATTATTCCGC GTATTCACGC CAGCGTGACC TTTTACGGCT GTGCCGTTGT GCGCCAGTTT
GAAATGATGG GCGTATTTGC CGCCAACGAT TCGATTTCAA TCGCACGTTC ACGGGACAAG
TTACGGGCGC TGCAATTGCT TTCCCGCAAA GGTATCGGCA TGCCAGTGAC GGGATTTGCC
AATAAACCCA ATGATATTCC CGACTTGATT AACATGGTGG GCGGTGCCCC TTTAGTGATT
AAGTTGTTGG AAGGCACCCA AGGGATTGGC GTGGTGTTAG CCGAAACCAA AACCGCTGCC
GAGAGCGTGA TTGAAGCCTT TTTAGGGTTG AAAGCCAATA TTATGGTGCA GGAATATATT
AAGGAGTCCA ACGGCAGCGA TATTCGCTGT TTTGTGGTCG GCGATAAAGT CGTGGCTTCG
ATGAAGCGCC AAGGGCCCGA AGGGGATTTT CGCTCTAACC TGCACTTAGG CGGCTGCGGC
GAGAAAGTAA AAATTACGCC CGAAGAGCGC AAGATGGCGG TTGCCGCTGT GAAAGCCATG
GGATTAGTGG TGGCGGGGGT TGATATTTTA CGATCGAATC GCGGCCCCTT GATCCTAGAG
GTGAACTCGG CGCCCGGTAT TGAAGGCATT GAGCAGACCA CGGGGATTTC GGTAACTGAG
CCTATCGTGG AATATATTGA GAAGATGGTA TTAGCGCGTA AATCGAATCG CGCCGTGATT
GCCTAA
|
|---|
| Protein sequence | MKIGILSQFP ELYSTRRLVA ACESRGHEAV VINTLNCYMN INSIKPSIHY QGQELTGFDA
IIPRIHASVT FYGCAVVRQF EMMGVFAAND SISIARSRDK LRALQLLSRK GIGMPVTGFA
NKPNDIPDLI NMVGGAPLVI KLLEGTQGIG VVLAETKTAA ESVIEAFLGL KANIMVQEYI
KESNGSDIRC FVVGDKVVAS MKRQGPEGDF RSNLHLGGCG EKVKITPEER KMAVAAVKAM
GLVVAGVDIL RSNRGPLILE VNSAPGIEGI EQTTGISVTE PIVEYIEKMV LARKSNRAVI
A
|
|---|
| |