| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3408 |
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| Symbol | |
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| ID | 4254674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4039660 |
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| End bp | 4041666 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638124089 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_739446 |
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| Protein GI | 114048896 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.233269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGTATC AACCTATCAA ATTAGCCGTT ATTTTAGCGG GAGTGCTCGG CACCGCTATA
CCTCAATTAA GCTGGTCTTC TGAGGCGAGC GATTGTGGTG AAGATAAAAA ATGTCAGGAT
TATCTAAGAG TATCTGGCGA TGTAATGCGC CAGCCTGTCC ATCTAGTGAG CGATCCTAAA
CAGAACCGTT TGCCATTGCC TGCCTATGAT GGCTCGGGAT TTTTACGTTC GATCCCCGGA
TTTAATATCA CTCGCAAAGG CGGCTCTGGT GGCGATCCTA TGTTTCGGGG GCTGGGCGGC
TCGCGTTTAA ACATAGTCGA TGATGGTCAG CATGTGTATG GCGCCTGTGG TGGACGTATG
GACCCACCGA CAAACTATAT TTATCCCGAA AGCTACGATC AGATAACGGT AATTAAAGGG
CCACAGACGG TGAAATACGG CCCCGTTGGC ACTGCGGGCA CAATTCTATT TGAGAAAAAC
CGCCATCGCT TTAACCAAGC GGATCTTGAA GGCCGAGCCA GCGCTACGGG CGGGAGTTTC
GATAGACGAG ATGCCATGGT GGAGCTGAGC GCTGGGGATA AGAATTACTA CCTTGATTTA
GATATGAATC AATCCAGTAG TGACCATTAT GAAGACGGAA ATGGCAACAA AGTACAGTCG
AGTTACGATC GCCAAAACGC GAATCTCGCC TTGGGGTGGA CACCGACAGA GCGCACTGTA
CTTGAGTTGG CCTACGGTGA GTCGAGCGGC GAAGCCGAGT ATGCCGACAG GTTAAACAAG
GCGCGTCAAA TCGATAACCG TGATGCGGCG CTACTGCTAC AACACGAGTT TGAATCGAGC
TGGTTAACGG CGGTCGAACT GCAAGCCTTT AGCAATAAAA ACGACCACAT TATGGATAGG
TTCGATGAAG GTGTTAATTC AGGCGCCAAT GTGCGGCGGA TGACAGAGGG CGGCCATTTG
TGGTTCGAGT TAGCGCCACT CGATGCCCTC GAATTAACAC TGGGGCTGGA TTATATGTCG
AGCAAACATG ATGGTCGCAG CATGGCGCCC GGCGATGTTG GTTTAGACGA CTTGCTCAAT
AAACCCTTTA AAGAGGATAT GCGCTATCAA AACTATGGGC TGTTTGCCGA GTCGCGCTAT
CGTTTTGAAG AGAGCGACCT AGGCAGCAGT AGCTTGCACG CAGGATTGAG GCTCGACGAC
TGGAATAGCG AGCTCTTGAT TGCTCAGCAG GGGGAGCGGG ACGATACCCT CTACAGTGGA
TACCTGCGTT ATGAGTTTCA AACCGCGCAG CATCAATATT ATGCAGGCTT TGGCTCGGCG
CAGCGGATGC CAGATTACTG GGAGATTATG AAGGCTAGCG CCGATAACCC CGCACAAAAA
GCCTTTGACC TTAAAGCGGA AACCACCAAT CAGTTCGATA TAGGTTGGAT TTATCAGGGG
CCTGTCGAGG CTTCGGTGTC ACTCTTCTAT GGTGAGATTG CGGACTATAT TCTGATTGAT
TCCAGCGGCC AAGCCACCCT TGCCCGTAAT ATTGATGCGA GTCTCTACGG TGGTGAGGCC
AGCCTAGATT ATGCGCTGAA TGAGCAATGG TCGAGCCAAC TCACGGTGAG TTATACCCAT
GGTGAAAACG ATACCGACAA GGTGGCGCTT GGGCAAATAT CGCCGTTAGA GGCCAGATTA
ACCGTTAACT ACCAATGGCA AAGTTGGACC ATGGCGGCGC AGTGGCGAGT GGTGGCCGCG
CAAGACCGTT ACACCTTAGG TCATGGCAAT ATTGTGGGGC AAGACTTAGG CCCGAGCAGC
GGTTTTGGTA CTTTGGCGCT CAATGCTTCT TGGTCGTATA ACAAGGATTT ATCCTTAATT
TTGGGTGTCG AAAACCTGTT TGATACCGCC TATGCCGAGC ATGTGAGTAA GGCGGGTACG
GGGAACGATC TGCCGGGCAG TGAGGCCATG TTTAGGGTCA ACGAGCCGGG TCGTAATCTG
TGGGCTAAGC TGACCTATCA GTTCTAA
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| Protein sequence | MLYQPIKLAV ILAGVLGTAI PQLSWSSEAS DCGEDKKCQD YLRVSGDVMR QPVHLVSDPK
QNRLPLPAYD GSGFLRSIPG FNITRKGGSG GDPMFRGLGG SRLNIVDDGQ HVYGACGGRM
DPPTNYIYPE SYDQITVIKG PQTVKYGPVG TAGTILFEKN RHRFNQADLE GRASATGGSF
DRRDAMVELS AGDKNYYLDL DMNQSSSDHY EDGNGNKVQS SYDRQNANLA LGWTPTERTV
LELAYGESSG EAEYADRLNK ARQIDNRDAA LLLQHEFESS WLTAVELQAF SNKNDHIMDR
FDEGVNSGAN VRRMTEGGHL WFELAPLDAL ELTLGLDYMS SKHDGRSMAP GDVGLDDLLN
KPFKEDMRYQ NYGLFAESRY RFEESDLGSS SLHAGLRLDD WNSELLIAQQ GERDDTLYSG
YLRYEFQTAQ HQYYAGFGSA QRMPDYWEIM KASADNPAQK AFDLKAETTN QFDIGWIYQG
PVEASVSLFY GEIADYILID SSGQATLARN IDASLYGGEA SLDYALNEQW SSQLTVSYTH
GENDTDKVAL GQISPLEARL TVNYQWQSWT MAAQWRVVAA QDRYTLGHGN IVGQDLGPSS
GFGTLALNAS WSYNKDLSLI LGVENLFDTA YAEHVSKAGT GNDLPGSEAM FRVNEPGRNL
WAKLTYQF
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