Gene Shewmr7_3363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3363 
SymbolnrfA 
ID4255318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3976874 
End bp3978295 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content48% 
IMG OID638124045 
Productcytochrome c552 
Protein accessionYP_739402 
Protein GI114048852 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit 
TIGRFAM ID[TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.328864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0260908 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACACG GAGATGAGAT GATGAAGAAG ATGACAGGTA AGTCCTTTGC ACTCAGTGCA 
TTGGTAGCCG CGAGCTTCAT GGCTGCGGGT GCGATGGCGA GCGATAAGAC CGAGCCTCGC
AACGAAGTAT ATAAAGACAA GTTTGCTAAT CAATATAATA GCTGGCATGA CACAGCGAAA
AGCGAAGAGA TCACCGATGC ATTAGCGGGC GATCCAAGCT TAGTGATTCT GTGGGCTGGT
TATGGTTTTG CTAAAGACTA CAACGCACCA CGCGGCCATA TGTATGCTGT GACCGACGTG
CGTAACACCC TACGTACTGG CGCACCTACC AACGCCGAAG ATGGTCCAAT GCCAATGGCA
TGTTGGAGCT GTAAGAGCCC TGACGTACCT CGCCTGATTG AAGAACAAGG TGAAGATGGT
TACTTCAAAG GCAAGTGGGC TAAAGGTGGC CCAGAAGTGG TGAACACAAT CGGTTGTAGC
GACTGCCACG AAAAAGGCAC GCCAAAACTG CGTATTTCAC GCCCATTCGC TGAACGTGGT
ATGGAAGCAT TAGGCACTCC ATTCGACAAA GCCTCGAAGA AAGACAAGCA ATCTATGGTT
TGCGGTCAGT GTCACGTTGA ATACTACTTC GAGAAGAAAG ATGATCGTAA AGGCTTCGTA
AAATTCCCTT GGGATTCAGG TACTACTGTT GAACAAATGG AAGCTTACTA CGATGCTATC
GAGTTCTCTG ACTGGACTCA TTCACTGTCT AAAACCCCAA TGTTGAAGGC GCAGCACCCT
GGTTATGAAA CCTGGAAAAT GGGCGTACAC GGTAAGAATG ATGTGAGCTG TGTTGACTGT
CACATGCCTA AAGTGACTAA CGACAAAGGT CGTAAGTACA CAGATCATAA AGTGGGTAAC
CCATTCGATC GCTTCGATGA AACCTGTGCA ACTTGCCATA GCCAAAGCAA AGAGTTCTTA
GAAGGCATCA CTAAAGAACG TTATGCCAAA GTGAAAGAGC TGAAAGCACG TGCCGAAGGT
CAATTAGTGA AAGCACACTT CGAAGCGGCT AAAGCGTGGG AAGTAGGTGC AACTGAAGCC
GAAATGAAGC CAATCCTGAC TGATATCCGT CATGCTCAAT GGCGCTGGGA CTTCGCGATT
GCTTCTCACG GTGTAGCGGC TCACGCTCCA GAAGAAGCAC TGCGTATCCT AGGTACTGCG
GTTGATAAAG CGGCCGATGC CCGTGTGAAA TTAGCCCAAT TACTGGCGAA GAAAGGCGTG
ACTGATGCTG TTGCTATCCC TGATATCTCC ACTAAAGCCA AAGCTCAGGC AGCTCTGGGT
ATGGACATGG ACAAGATGAA TGCAGAGAAA GAAGCATTCA AGAAAGACAT GTTACCTAAG
TGGGATGCAG AAGCGAAAAA ACGCGAAGCA ACTTATAAGT AA
 
Protein sequence
MQHGDEMMKK MTGKSFALSA LVAASFMAAG AMASDKTEPR NEVYKDKFAN QYNSWHDTAK 
SEEITDALAG DPSLVILWAG YGFAKDYNAP RGHMYAVTDV RNTLRTGAPT NAEDGPMPMA
CWSCKSPDVP RLIEEQGEDG YFKGKWAKGG PEVVNTIGCS DCHEKGTPKL RISRPFAERG
MEALGTPFDK ASKKDKQSMV CGQCHVEYYF EKKDDRKGFV KFPWDSGTTV EQMEAYYDAI
EFSDWTHSLS KTPMLKAQHP GYETWKMGVH GKNDVSCVDC HMPKVTNDKG RKYTDHKVGN
PFDRFDETCA TCHSQSKEFL EGITKERYAK VKELKARAEG QLVKAHFEAA KAWEVGATEA
EMKPILTDIR HAQWRWDFAI ASHGVAAHAP EEALRILGTA VDKAADARVK LAQLLAKKGV
TDAVAIPDIS TKAKAQAALG MDMDKMNAEK EAFKKDMLPK WDAEAKKREA TYK