Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3363 |
Symbol | nrfA |
ID | 4255318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3976874 |
End bp | 3978295 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638124045 |
Product | cytochrome c552 |
Protein accession | YP_739402 |
Protein GI | 114048852 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.328864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0260908 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACACG GAGATGAGAT GATGAAGAAG ATGACAGGTA AGTCCTTTGC ACTCAGTGCA TTGGTAGCCG CGAGCTTCAT GGCTGCGGGT GCGATGGCGA GCGATAAGAC CGAGCCTCGC AACGAAGTAT ATAAAGACAA GTTTGCTAAT CAATATAATA GCTGGCATGA CACAGCGAAA AGCGAAGAGA TCACCGATGC ATTAGCGGGC GATCCAAGCT TAGTGATTCT GTGGGCTGGT TATGGTTTTG CTAAAGACTA CAACGCACCA CGCGGCCATA TGTATGCTGT GACCGACGTG CGTAACACCC TACGTACTGG CGCACCTACC AACGCCGAAG ATGGTCCAAT GCCAATGGCA TGTTGGAGCT GTAAGAGCCC TGACGTACCT CGCCTGATTG AAGAACAAGG TGAAGATGGT TACTTCAAAG GCAAGTGGGC TAAAGGTGGC CCAGAAGTGG TGAACACAAT CGGTTGTAGC GACTGCCACG AAAAAGGCAC GCCAAAACTG CGTATTTCAC GCCCATTCGC TGAACGTGGT ATGGAAGCAT TAGGCACTCC ATTCGACAAA GCCTCGAAGA AAGACAAGCA ATCTATGGTT TGCGGTCAGT GTCACGTTGA ATACTACTTC GAGAAGAAAG ATGATCGTAA AGGCTTCGTA AAATTCCCTT GGGATTCAGG TACTACTGTT GAACAAATGG AAGCTTACTA CGATGCTATC GAGTTCTCTG ACTGGACTCA TTCACTGTCT AAAACCCCAA TGTTGAAGGC GCAGCACCCT GGTTATGAAA CCTGGAAAAT GGGCGTACAC GGTAAGAATG ATGTGAGCTG TGTTGACTGT CACATGCCTA AAGTGACTAA CGACAAAGGT CGTAAGTACA CAGATCATAA AGTGGGTAAC CCATTCGATC GCTTCGATGA AACCTGTGCA ACTTGCCATA GCCAAAGCAA AGAGTTCTTA GAAGGCATCA CTAAAGAACG TTATGCCAAA GTGAAAGAGC TGAAAGCACG TGCCGAAGGT CAATTAGTGA AAGCACACTT CGAAGCGGCT AAAGCGTGGG AAGTAGGTGC AACTGAAGCC GAAATGAAGC CAATCCTGAC TGATATCCGT CATGCTCAAT GGCGCTGGGA CTTCGCGATT GCTTCTCACG GTGTAGCGGC TCACGCTCCA GAAGAAGCAC TGCGTATCCT AGGTACTGCG GTTGATAAAG CGGCCGATGC CCGTGTGAAA TTAGCCCAAT TACTGGCGAA GAAAGGCGTG ACTGATGCTG TTGCTATCCC TGATATCTCC ACTAAAGCCA AAGCTCAGGC AGCTCTGGGT ATGGACATGG ACAAGATGAA TGCAGAGAAA GAAGCATTCA AGAAAGACAT GTTACCTAAG TGGGATGCAG AAGCGAAAAA ACGCGAAGCA ACTTATAAGT AA
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Protein sequence | MQHGDEMMKK MTGKSFALSA LVAASFMAAG AMASDKTEPR NEVYKDKFAN QYNSWHDTAK SEEITDALAG DPSLVILWAG YGFAKDYNAP RGHMYAVTDV RNTLRTGAPT NAEDGPMPMA CWSCKSPDVP RLIEEQGEDG YFKGKWAKGG PEVVNTIGCS DCHEKGTPKL RISRPFAERG MEALGTPFDK ASKKDKQSMV CGQCHVEYYF EKKDDRKGFV KFPWDSGTTV EQMEAYYDAI EFSDWTHSLS KTPMLKAQHP GYETWKMGVH GKNDVSCVDC HMPKVTNDKG RKYTDHKVGN PFDRFDETCA TCHSQSKEFL EGITKERYAK VKELKARAEG QLVKAHFEAA KAWEVGATEA EMKPILTDIR HAQWRWDFAI ASHGVAAHAP EEALRILGTA VDKAADARVK LAQLLAKKGV TDAVAIPDIS TKAKAQAALG MDMDKMNAEK EAFKKDMLPK WDAEAKKREA TYK
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