| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3310 |
|---|
| Symbol | |
|---|
| ID | 4255405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3919370 |
|---|
| End bp | 3922033 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638123992 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_739349 |
|---|
| Protein GI | 114048799 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCC CTGCATTAAC CCCTAAGGCC AATCACTGCC AAACCAGAAA CCGCCCATGG
CTGCGGATCT ATTGGGTATT AAAGGTCTTT CTCGCCCACT ATCGCCACGC GCCGCTGCAA
GCGGGCGCGA TTTTGCTTGG CCTTGCCCTC GCCGTGACTT TACTTATCGG GGTTAAAGCC
ACCAATGATA ATGCCATTCG CAGCTACAGT GAGGCCACAG AACTCTTGAG CCAGCGGGCC
GATGTGCTCT TAAGCGCGCC GATTGGCCAA GAAACCCTCG ACGAATCCGT GTATTTCAGC
CTGCGCCAAG CGGGCATAAG CCAAAGCCTT GCGGTTGTCA GTGGCAGAGT GGCGGGCCTG
AACGGTCAGT TCTGGCAAAT TGAAGGCAGC GATATCGTCG CCGCACTGAC GGCAAGTCTA
AGCATAAAAG AGGAACAAAA GCACAACGCC AGCACAAAGC AAGCAACCAA TCCAAGGATG
TCGATGGGAG CGCTGCCCCT CGCCGAGTTA ATGAGTGGTG AGCCGATAGT GGTTATGAGT
CAGAGCCTTG CCAATAAGAT CGCGCCCAAT GGCCAACTCG CCCTCGCGCC CGCGTCTTTT
GCACCAGACA AGCTTAAGGT CATTAGTATC GATGATAGTT GGGGGCTAGG CAGTGCGATT
CTGACCGATA TTTCCCTCGC CCAAACGTTG CTCGGGATGC AAGGTAAACT CAGCTATATC
GCCCTATTCA GTGACAGGGA TAAGCTCCCC GCCTTAAAGC TGCGGCTCGA TACCCTAGGC
ATTACGCCGC TTCGCGCCAG TTACAGTCAA CAGGATCAAG GCCAAGCCTT GATGGCGCTT
ACCCGCAGTT TTCATTTAAA CCTCAATGCG ATGAGCATGT TAGCCTTTGT GGTCGGACTG
TTTATTGCCT ATAACGGGGT GCGTTACAGC CTGATGAAAC GCCAACGTCT ATTAATCCAA
TTGCTGCAAC AGGGCTTAGC GCGGCGCGAA GTCATGCTTG CCCTACTTGG CGAGTTGCTG
CTGTTAGTGG TGTTGGGCTC GCTAATGGGA TTTATCCTAG GATTACAGCT GAGTCACTGG
TTGCAACCTA TGGTCGCTAT GACCTTAGAG CAGCTCTACG GCGCCCACTT GTTGCCGGGG
ATTTGGCAAT GGCGTTGGTT GGCCGAAGCG ATAGCCCTCA CTTTAGTTTC CGCCCTAGCC
GCCTGCTTAC CCTTGTATTT TGACTTAACC CGCCAATCCC TCGCCCAAGG CGCTAATCGT
TATCAACAAA CGCAAGCTCA CAACAAAACC CATGGCAGGC AGTTTATCTT AGCCTGCAGC
CTGCTCACGC TCGCCGCAAT ACTCATGCCC TTCAGCCAAA GCTATAACAC CAGTTTGGTA
TTGTTGGGCA TGGTTGCCGT TGCGATTCCG TTGTTATTAC CGCAAGTATT GCATTGGGGC
GTCAGCTTGC TGCTGCCATT GACTCGCCCC GGACTTAAGC ACTATCTCCT TGCCGAAACC
CGCGAGCTTA TCGCGCCATT GTCCCTCGCC ATGATGGCGA TACTGCTGGC ACTGAGCGCC
AATGTGTCGA TGAATACCTT GGTCGGTAGC TTCGAGCAAA CCTTAAGAAG CTGGTTAGAA
ACCCGTCTGC ATGCCGATTT GTACCTGCGC CCCAGCGCCA ACCATATGGC CGAAGTGCGC
GATAAATTAA GCCAAGATCC TCGCCTGAGC GGCCTTTATC AGCAATGGCA AGTGGAGGCC
GAAGTATCAC TCCAAGGGGC GGCACAAACT ATCCTAGTCA ACCTGATTAG CCGCGATGAT
GCATCGATTC AACACACCAG CACACTCAAA GAAAGCTTGC CGGATCTCTG GCAAACCTAC
TTTGAAGGGC GTTACGTGTT AGTCAGCGAA CCCACGGCCA TTAAGTATCA ACTGCAACTC
GGGGATAGTT TGGCGTTAAA TGTGCTAGAC AAAACCGCCA ATAATCCCGT GGTGATCGCG
GGGATTTATT ACGACCATGG CAATACCCGT AATGAGCTCA TCATCAGCCA TGAGCTATGG
CAACAGGCGC AGCTACCCGT GTTACCCATT AGCCTTGCCG CCAGTTTCCA CTCTGTCGAG
CCAGAAGAGC AAACCACTGC GACTCAGCCC AAACTCAGCG AGGCTGATCT AGATGAACTG
CAAGGGCAAT TGGCCGTTAC ATTGGGCTTA GCGCAGGCGC AAATTTACAG CCAAGCCAAG
ATCAAGGCTC AGGCCATTGC CATGTTTAAA CGCACATTCT CAATCACCTT AGTACTCAAT
AGCTTAACTT TGCTGGTGGC TGCCATAGGG CTATTTAGCG CCTGCTTGAT GTTAACTCAA
TCCAGGCAAG CGCCATTGGC GAGGCTGTAT TCCCTCGGGG TGAGTCGTAA CAAATTGCGG
ACTATGGTGT TCAGCCAAAT GCTGCTAGTC GTGGTCATCA CTTGCCTGAT CGCCATGCCT
ACAGGCGCGC TGCTCGGCTA TTTATTGATT GATAAAATCA CCCTGCAGGC CTTCGGCTGG
ACAATCAAGA TGATATGGGA TTGGTTTGCC TATGGAAAAG CCATCCTCAT TGCCTTAGTA
ACCTGCACCT TAGCCGTACT CTTACCGCTT TACTGGCAAA CCCGCAGGCC CTTAATCGCC
AGTTTGCAGC AGGAAACCCT ATGA
|
|---|
| Protein sequence | MMSPALTPKA NHCQTRNRPW LRIYWVLKVF LAHYRHAPLQ AGAILLGLAL AVTLLIGVKA
TNDNAIRSYS EATELLSQRA DVLLSAPIGQ ETLDESVYFS LRQAGISQSL AVVSGRVAGL
NGQFWQIEGS DIVAALTASL SIKEEQKHNA STKQATNPRM SMGALPLAEL MSGEPIVVMS
QSLANKIAPN GQLALAPASF APDKLKVISI DDSWGLGSAI LTDISLAQTL LGMQGKLSYI
ALFSDRDKLP ALKLRLDTLG ITPLRASYSQ QDQGQALMAL TRSFHLNLNA MSMLAFVVGL
FIAYNGVRYS LMKRQRLLIQ LLQQGLARRE VMLALLGELL LLVVLGSLMG FILGLQLSHW
LQPMVAMTLE QLYGAHLLPG IWQWRWLAEA IALTLVSALA ACLPLYFDLT RQSLAQGANR
YQQTQAHNKT HGRQFILACS LLTLAAILMP FSQSYNTSLV LLGMVAVAIP LLLPQVLHWG
VSLLLPLTRP GLKHYLLAET RELIAPLSLA MMAILLALSA NVSMNTLVGS FEQTLRSWLE
TRLHADLYLR PSANHMAEVR DKLSQDPRLS GLYQQWQVEA EVSLQGAAQT ILVNLISRDD
ASIQHTSTLK ESLPDLWQTY FEGRYVLVSE PTAIKYQLQL GDSLALNVLD KTANNPVVIA
GIYYDHGNTR NELIISHELW QQAQLPVLPI SLAASFHSVE PEEQTTATQP KLSEADLDEL
QGQLAVTLGL AQAQIYSQAK IKAQAIAMFK RTFSITLVLN SLTLLVAAIG LFSACLMLTQ
SRQAPLARLY SLGVSRNKLR TMVFSQMLLV VVITCLIAMP TGALLGYLLI DKITLQAFGW
TIKMIWDWFA YGKAILIALV TCTLAVLLPL YWQTRRPLIA SLQQETL
|
|---|
| |