Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3228 |
Symbol | |
ID | 4255729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3821705 |
End bp | 3822607 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638123911 |
Product | tyrosine recombinase XerD |
Protein accession | YP_739268 |
Protein GI | 114048718 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.302685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTAAAA CCTATCAGTG CGATCCGCTT ATCGATGCCT TTCTCGATGA TCTTTGGTCC AGCAAGGGCT TAAGTGATAA CACCTTGAGT GCCTATCGCA CCGATTTACG CCATTTTGAC CGCTATCAGC AGAGCCAAGG CCTGCGGTTA ATCGAGGTGG GGCAAGCCGA TGTGCGCGCC TATTTAGCCT ACCGAGTCCA ACAACAATTT GCCCGCACCA GTAGCGCACG TCTACTTAGC AGTTTACGGC GCTTTTACAC TTATTTATTG CAAACCAAGC AGATTGCTGG CGATCCTATG GCGCTGATCG AATCGCCCAA ATTGAGTCGG CAATTGCCAG ATTCCTTAAG TGAGTCACAG GTCGATAGAT TGCTGGCCGA GCCCAATGTG GACGACCCAG TTGAGTGCCG TGATAAAGCC ATGCTTGAAC TCTTATACGC CACTGGATTG CGGGTGAGTG AACTGGTGGG GCTCACTATG GAACAGATGA GTTTGCGCCA AGGTTTAGTA CGGATTGTGG GTAAGGGCGG TAAAGAGCGG TTAGTGCCCA TGGGCGAGCT GGCCATTACC GAGGTTGAAC GCTACTTAAG CTTTGCGCGC CACGAGCTCT TGGGCAATAT TCAGTCCGAT GTGGTATTTC CATCTAAGCG CTCGCAGATG ATGACGAGGC AAACCTTTTG GCATCGGATC AAGCTCTATG CGAGCCGCGC CGGCATCGAA ACTGAACTCT CACCCCATAC TCTGCGCCAT GCCTTTGCCA CCCACTTACT CAACCATGGC GCCGACCTTA GGGTGGTACA ATTACTCTTA GGTCACAGTG ACTTATCGAC GACTCAAATT TATACCCATG TGGCGCGAGC GAGATTACAA GAGTTGCACC AACAGCATCA TCCTCGTGGT TAA
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Protein sequence | MAKTYQCDPL IDAFLDDLWS SKGLSDNTLS AYRTDLRHFD RYQQSQGLRL IEVGQADVRA YLAYRVQQQF ARTSSARLLS SLRRFYTYLL QTKQIAGDPM ALIESPKLSR QLPDSLSESQ VDRLLAEPNV DDPVECRDKA MLELLYATGL RVSELVGLTM EQMSLRQGLV RIVGKGGKER LVPMGELAIT EVERYLSFAR HELLGNIQSD VVFPSKRSQM MTRQTFWHRI KLYASRAGIE TELSPHTLRH AFATHLLNHG ADLRVVQLLL GHSDLSTTQI YTHVARARLQ ELHQQHHPRG
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