Gene Shewmr7_3085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3085 
Symbol 
ID4256430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3662573 
End bp3663436 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content45% 
IMG OID638123769 
ProductMltA-interacting MipA family protein 
Protein accessionYP_739126 
Protein GI114048576 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3713] Outer membrane protein V 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00416947 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.497411 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATCGAA CACTGTTTAT CTTACTCACC GCACTTAGCC TGCCTTCAAT AGGAATGGCG 
AAGGAACCGT GCGTCACTAA AGATGAATGC ATCGAAATGC GTAACTGGGA TTTAGGCGTG
GCGGTCGGCT GGGGACAAAA GACCAATCCA CTGCGGGATT TTGATGATAT TCCAGTCTTT
TTTATCCCTA CCGTAGCTTA CTATGGTGAA CATTGGTTTT TTGATAACGG TAACTTAGGT
TTCAGCTTAA CCGAGCAGAA ATACTTCAGT TTAAACTTAG TGACCAGCTA TAGCTTAGAT
AGAGCCTACT TTTACCGCTG GGATCCATCG AACATCTTCC TGAAACGCAG CTCACAGGAA
GAGGCAAGAC TGCTCGCCAC CAATACTGCC CTCAGCACTG AACCCGATCC CGTGTTTAAC
TCCTTAGAAT CGCGAAACTT TACCATGCTG GGCGGCGCAG AAGCCTTTAT TTATAGCCCG
TTAGGTGTAG TTAGATTAGC CTACACCCAT GATATGTTTA ATGTGCACCA AGGCGCCGAA
GCGCAAATAA AATGGACCTA TGGCTGGCAT TTAACCCACT GGGTCATGGA TATGTCGCTC
GTGTTTGATT GGAAAAGTAC TAATGTCGTC GACTATTACT ATGGTGTACG TCCGAGTGAA
AATGCTTATT GGAGCCAACA TTACCATGCA GATGCTGGTT GGAATAAAGG GATAGAAATG
ACGGCCCGTT ATATCTTAAC TGATAACTGG GATATGCTTT TTGCGTTTCG CTATACACAA
CTTGCAGATG AAATTGCCGC CAGCCCCTTG CTCGATGAAG ACTATAGCAG CACATATTTT
ATTGGCGCAG CGTATAGGTT TTGA
 
Protein sequence
MYRTLFILLT ALSLPSIGMA KEPCVTKDEC IEMRNWDLGV AVGWGQKTNP LRDFDDIPVF 
FIPTVAYYGE HWFFDNGNLG FSLTEQKYFS LNLVTSYSLD RAYFYRWDPS NIFLKRSSQE
EARLLATNTA LSTEPDPVFN SLESRNFTML GGAEAFIYSP LGVVRLAYTH DMFNVHQGAE
AQIKWTYGWH LTHWVMDMSL VFDWKSTNVV DYYYGVRPSE NAYWSQHYHA DAGWNKGIEM
TARYILTDNW DMLFAFRYTQ LADEIAASPL LDEDYSSTYF IGAAYRF