Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3036 |
Symbol | ispH |
ID | 4256416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3599563 |
End bp | 3600519 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638123714 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_739077 |
Protein GI | 114048527 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.359082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.183219 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTAG ATCCTACCAG CCCAAGTTTA AATATTATGC TGGCCAATCC TCGCGGCTTT TGTGCTGGTG TGGATCGCGC CATTAGTATT GTCGAGCGCG CACTCGAGTT ATTTTCGCCG CCGATTTATG TTCGCCATGA AGTCGTGCAT AACCGCTATG TAGTGCAAAA TCTGAAGGAC CGCGGTGCCG TTTTTGTCGA AGAGTTAGAC CAAGTACCGG ATAACAATAT TGTTATCTTC AGTGCTCATG GAGTTTCTCA GGCAGTGCGT GCCGAGGCTA AGGCGCGTGG GCTGCGAGTT TTCGATGCGA CTTGTCCATT AGTCACCAAA GTGCATTTGC AGGTCACTCG AGCGAGCCGC AAGGGGATTG AATGTATTTT GATTGGTCAT GAGGGACATC CAGAAGTGGA AGGCACCATG GGGCAATATG ATAACCCTAA TGGCGGTGTT TATCTGATTG AATCTCCTGC AGATGTCGAA ACTTTAGAAG TTCGTGATCC AAATAACCTC TGCTTCGTGA CTCAAACGAC GCTCTCGGTA GATGATACCC TCGATATTAT CACCGCATTG CAAAAGCGTT TTCCTTCGAT TGAAGGTCCG CGTAAGGATG ATATTTGTTA CGCGACGCAA AACCGTCAGG ATGCAGTGCG GAACTTATCG GCCGATGTGG ATCTGTTAAT TGTGGTCGGT TCGAAAAACA GCTCTAACTC TAACCGCTTG CGTGAATTGG CATTAAAGAC GGGGACTCAA TCTTATCTGG TTGATACCGC GGATGATATC GATTCATCTT GGTTTGAAAA TGTGACTAAA GTTGCTGTGA CCGCTGGCGC ATCGGCACCA GAAGTGCTGG TTCAGCAAGT GGTTCAAGCG ATCGCGAAAT TAGCACCGAG TGTCGTCACC GAAGTTGAAG GGCGTAAAGA AGATACCGTC TTTGCAGTAC CTGCGGAATT ACGCTAG
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Protein sequence | MKLDPTSPSL NIMLANPRGF CAGVDRAISI VERALELFSP PIYVRHEVVH NRYVVQNLKD RGAVFVEELD QVPDNNIVIF SAHGVSQAVR AEAKARGLRV FDATCPLVTK VHLQVTRASR KGIECILIGH EGHPEVEGTM GQYDNPNGGV YLIESPADVE TLEVRDPNNL CFVTQTTLSV DDTLDIITAL QKRFPSIEGP RKDDICYATQ NRQDAVRNLS ADVDLLIVVG SKNSSNSNRL RELALKTGTQ SYLVDTADDI DSSWFENVTK VAVTAGASAP EVLVQQVVQA IAKLAPSVVT EVEGRKEDTV FAVPAELR
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