| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3004 |
|---|
| Symbol | |
|---|
| ID | 4256101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3560787 |
|---|
| End bp | 3562094 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638123682 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_739045 |
|---|
| Protein GI | 114048495 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.917445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA AACCTCCCGT TCATAGTGAA CAATATCCCC AGTCTTATTA TGTTGATACT
GCAAAAGAAA TTTGCGCTCA TCCCCAACTT GAGGGCAAGG TAAGCACTGA CGTTTGCATT
ATCGGCGGTG GTTTCAGTGG TATTAACACA GCTATCGAAC TGCGGCAAAA GGGCCTAAAC
GTGGTGCTAC TCGAGGCCAA GCGCATAGGC TGGGGCGCCT CAGGGCGTAA TGGTGGCGAG
CTGATCCGCG GGATTGGCCA TGATCCTGCG CAATTTATCA ATGAGATAGG CCAGGAAGGC
GTGAGCGCCA TTGAGCAAAT GGGGTTTGAG GCGGTAGAGA TTGTACGAAA TCGGATCCAG
ACCCATCACA TCGATTGCAA TTTACAAATG GGCTATTGCG ATCTGGCGGT TAAACCTCGG
CATATGCACG AACTAGAACA AGAGTTCGAC CATCTTAAAC GCCTTGGATA TCAGCATGAA
ATCAAACTAT TAACTCAGTC TCAGCTCGGA GAAGTTATCG GCTCAGACTT TTACCAAGGC
GCCCTAGTCG ACATGGGCAG CGGTCATTTG CATCCGCTGA ATTTGGCCTT GGGCGAGGCT
CGTGTCGCCC GTGACTTGGG CGCTCAATTA TTTGAATACA GCGCCGCAGA AAAGATGATT
CCTGGGGATA AACCGCGAGT ATTAACGGCA AAAGGCGAAG TGACTTGCCA ATATGTTGTG
CTCACGGGCA ACGCTTATAT TGGCCATAAA CTGAATAGTT ACATCGGCGG TAAAGTCCTG
CCCGCTGGGA GTTACTTGCT TGCAACTGAG CCGCTGACAG AAGCGCAATG CCAAAGCATT
ATCCCGCAAA ATATGGCCTT TGCAGACATG CGAATCGCCT TAGATTACTT CCACTTATCG
GCGGATAGAC GCTTACTCTT CGGCGGACTT TGTACTTATT CAGGCAAAGA TCCTAAGGAT
ATTGAAGCAG CGCTCAGGCC GAACCTCGAG AAGGTATTCC CACAGTTAAA AGGCGTACGC
ATCGATTACG AATGGGGCGG CATGATAGGC ATTGGCGCCA ACCGTATGCC CCAAATCGGT
CGCCTCCCCG ATGCGAGTAA TATTTTTTAC GCCCAAGCCT ACGCAGGCCA CGGCGTCAAT
GCCACCCATA TGGCTGCCAA ACTACTCGCC GAAGCCATAT GTCAGCAGGC GGGATATTTT
GATGTGTTTG CCAAAATCAA ACATATGACC TTCCCCGGCG GCCCCACATT CCGCTCGCCC
ATGCTGGCTG CGGGTATGCT GTACCACAGG TTTAAAGACT TATTCTAA
|
|---|
| Protein sequence | MTTKPPVHSE QYPQSYYVDT AKEICAHPQL EGKVSTDVCI IGGGFSGINT AIELRQKGLN
VVLLEAKRIG WGASGRNGGE LIRGIGHDPA QFINEIGQEG VSAIEQMGFE AVEIVRNRIQ
THHIDCNLQM GYCDLAVKPR HMHELEQEFD HLKRLGYQHE IKLLTQSQLG EVIGSDFYQG
ALVDMGSGHL HPLNLALGEA RVARDLGAQL FEYSAAEKMI PGDKPRVLTA KGEVTCQYVV
LTGNAYIGHK LNSYIGGKVL PAGSYLLATE PLTEAQCQSI IPQNMAFADM RIALDYFHLS
ADRRLLFGGL CTYSGKDPKD IEAALRPNLE KVFPQLKGVR IDYEWGGMIG IGANRMPQIG
RLPDASNIFY AQAYAGHGVN ATHMAAKLLA EAICQQAGYF DVFAKIKHMT FPGGPTFRSP
MLAAGMLYHR FKDLF
|
|---|
| |