Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3000 |
Symbol | |
ID | 4256097 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3555776 |
End bp | 3556939 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638123678 |
Product | extracellular solute-binding protein |
Protein accession | YP_739041 |
Protein GI | 114048491 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00190221 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGGTG ACACAATTTC AGAATTGTTA AAGGCAATTC TGCTACCCGA GAAAGGAGAA AGCATGAAGC TATTTAATAA GATGACGACT TTGGCTTTAG TAACCGCGGG CGCCCTCGCA AGCGTTGCTG CTCAAGCTGA AGAAGTAGTG CGCGTATATA ACTGGTCTGA TTATATCGCC GAAGATACCT TAGAAAACTT CAAGAAAGAG ACGGGCATTC GGGTGATTTA CGATGTGTTT GATAGTAACG AAGTGCTGGA AGCCAAGTTA CTGTCTGGCC GCAGTGGTTA CGACATCGTG GTTCCATCTA ACCATTTCCT CGCTAAACAA ATTAAGGCTG GCGCATTCAA GCCGCTAGAC CGCGCTAAAC TCAGCAACTT TAAAAACCTC AATGCCGATC TGATGAAACA GTTAGAGAAG GCTGATCCTG GTAACCAATA TGCCGTGCCT TACCTTTGGG GTACCAATGG TATCGGTTAC AACATCGATA AAGTGAAAGC CGCGGTAGGT GAAGATGCGC CATTTGATTC AATGGAGCTG ATCTTTAACC CAAAATATGC TGAAAAAATC TCTAAGTGTG GCTTTGCTAT GCTGGATTCG GCCGATGATA TGGTGCCACA AGCGATGATC TATTTAGGTC TTGACCCTAA CAGCACGAAA GCCGAAGACT ATGAAAAAGC AGGTGAATTA CTCGAAAAAA TTCGCCCTTA CGTGACTTAT TTCCACTCAT CACGCTATAT CTCTGATCTC GCGAACGGGG ACATCTGTGT GGCATTCGGC TTCTCTGGTG ACGTATTCCA AGCTGCTGCC CGTGCCGATG AAGCGGGTAA CGGCAACAAG ATTGGTTACT CGATTCCAAA AGAAGGCGCG AACCTGTGGT TCGATATGTT AGCTATCCCT GCGGATGCGG CTAACGTTGA AAATGCTCAC AAACTTATCA ACTACTTACT CCGCCCTGAA GTGATTGCGC CTATCTCTAA CTATGTGGCT TATGCGAACC CTAACGACCC AGCACAGCCT TTAGTTGATG AAGCGATTCG CAATGACCCT GCGATTTATC CGCCAAAAGA AGTGTTGGAT AAATTGTATA TTGGCGAAAT CCGTCCATTA AAAATCCAAC GCGTATTAAC CCGCGTCTGG ACCAAAGTGA AGTCTGGCCA ATAA
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Protein sequence | MVGDTISELL KAILLPEKGE SMKLFNKMTT LALVTAGALA SVAAQAEEVV RVYNWSDYIA EDTLENFKKE TGIRVIYDVF DSNEVLEAKL LSGRSGYDIV VPSNHFLAKQ IKAGAFKPLD RAKLSNFKNL NADLMKQLEK ADPGNQYAVP YLWGTNGIGY NIDKVKAAVG EDAPFDSMEL IFNPKYAEKI SKCGFAMLDS ADDMVPQAMI YLGLDPNSTK AEDYEKAGEL LEKIRPYVTY FHSSRYISDL ANGDICVAFG FSGDVFQAAA RADEAGNGNK IGYSIPKEGA NLWFDMLAIP ADAANVENAH KLINYLLRPE VIAPISNYVA YANPNDPAQP LVDEAIRNDP AIYPPKEVLD KLYIGEIRPL KIQRVLTRVW TKVKSGQ
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