Gene Shewmr7_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3000 
Symbol 
ID4256097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3555776 
End bp3556939 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content46% 
IMG OID638123678 
Productextracellular solute-binding protein 
Protein accessionYP_739041 
Protein GI114048491 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00190221 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGGTG ACACAATTTC AGAATTGTTA AAGGCAATTC TGCTACCCGA GAAAGGAGAA 
AGCATGAAGC TATTTAATAA GATGACGACT TTGGCTTTAG TAACCGCGGG CGCCCTCGCA
AGCGTTGCTG CTCAAGCTGA AGAAGTAGTG CGCGTATATA ACTGGTCTGA TTATATCGCC
GAAGATACCT TAGAAAACTT CAAGAAAGAG ACGGGCATTC GGGTGATTTA CGATGTGTTT
GATAGTAACG AAGTGCTGGA AGCCAAGTTA CTGTCTGGCC GCAGTGGTTA CGACATCGTG
GTTCCATCTA ACCATTTCCT CGCTAAACAA ATTAAGGCTG GCGCATTCAA GCCGCTAGAC
CGCGCTAAAC TCAGCAACTT TAAAAACCTC AATGCCGATC TGATGAAACA GTTAGAGAAG
GCTGATCCTG GTAACCAATA TGCCGTGCCT TACCTTTGGG GTACCAATGG TATCGGTTAC
AACATCGATA AAGTGAAAGC CGCGGTAGGT GAAGATGCGC CATTTGATTC AATGGAGCTG
ATCTTTAACC CAAAATATGC TGAAAAAATC TCTAAGTGTG GCTTTGCTAT GCTGGATTCG
GCCGATGATA TGGTGCCACA AGCGATGATC TATTTAGGTC TTGACCCTAA CAGCACGAAA
GCCGAAGACT ATGAAAAAGC AGGTGAATTA CTCGAAAAAA TTCGCCCTTA CGTGACTTAT
TTCCACTCAT CACGCTATAT CTCTGATCTC GCGAACGGGG ACATCTGTGT GGCATTCGGC
TTCTCTGGTG ACGTATTCCA AGCTGCTGCC CGTGCCGATG AAGCGGGTAA CGGCAACAAG
ATTGGTTACT CGATTCCAAA AGAAGGCGCG AACCTGTGGT TCGATATGTT AGCTATCCCT
GCGGATGCGG CTAACGTTGA AAATGCTCAC AAACTTATCA ACTACTTACT CCGCCCTGAA
GTGATTGCGC CTATCTCTAA CTATGTGGCT TATGCGAACC CTAACGACCC AGCACAGCCT
TTAGTTGATG AAGCGATTCG CAATGACCCT GCGATTTATC CGCCAAAAGA AGTGTTGGAT
AAATTGTATA TTGGCGAAAT CCGTCCATTA AAAATCCAAC GCGTATTAAC CCGCGTCTGG
ACCAAAGTGA AGTCTGGCCA ATAA
 
Protein sequence
MVGDTISELL KAILLPEKGE SMKLFNKMTT LALVTAGALA SVAAQAEEVV RVYNWSDYIA 
EDTLENFKKE TGIRVIYDVF DSNEVLEAKL LSGRSGYDIV VPSNHFLAKQ IKAGAFKPLD
RAKLSNFKNL NADLMKQLEK ADPGNQYAVP YLWGTNGIGY NIDKVKAAVG EDAPFDSMEL
IFNPKYAEKI SKCGFAMLDS ADDMVPQAMI YLGLDPNSTK AEDYEKAGEL LEKIRPYVTY
FHSSRYISDL ANGDICVAFG FSGDVFQAAA RADEAGNGNK IGYSIPKEGA NLWFDMLAIP
ADAANVENAH KLINYLLRPE VIAPISNYVA YANPNDPAQP LVDEAIRNDP AIYPPKEVLD
KLYIGEIRPL KIQRVLTRVW TKVKSGQ