Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2940 |
Symbol | nhaR |
ID | 4257715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3481241 |
End bp | 3482149 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638123617 |
Product | transcriptional activator NhaR |
Protein accession | YP_738981 |
Protein GI | 114048431 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.252143 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCATC TTAATTACAA CCATCTTTAT TATTTCTGGA TGATCAAGAA GAAGGGCTCA GTGGCTAAGG CCGCAGAAGC TCTTTGTTTA GCGCCACAAA CCATCACAGG CCAAATTCGC GCCTTAGAAG ACAGGTTAAA TGGTAGTTTA TTCAAACGTG TCGGACGAAA TTTAGAAGCG ACTGAACTTG GGGAACTGGT GTTTCGCTAC GCCGATAAGA TGTTTTCCCT CAGTTATGAG ATGCTCGACT TACTGAACTA TCAAAAAGAT GATGCCATTT TATTTGAAGT GGGTATTGCC GATGCCTTGT CTAAAGCCCT GGCGAGTCGA GTATTACTTT CTGTGGTACC TAATGACGGT TCCATGCACC TTGCCTGTTA TGAAGCGACC CACGAAAGTT TAATGACCCG TTTACGCGAG CATAAATTGG ATATGATCCT CTCAGACTGT GCGGGTGAGT CATTGAAATA TCCCGAGATT TTATCGAAAA AGCTGGGTGA GTGTGGCGTG AGTTTTTTTT CTGCAGAAAC CTACAGCGCC GATTTCCCTG CTTGTTTAGA GCAAGGGCAA TTGCTGATCC CAGGTCGTAG AACATCGCTT GGGCAACAAT TATACCGTTG GTTCGATGAG CAAAATCTTA AGGTCAGTAT CTTAGGCGAA TTTGATGATG CGGCCATGAT GAAGGCCTTT GGCTACCTTA AACGTGGAAT CTTCGTTACG CCGTCGATTT ATCCCCAAGA AGTGATTTCC CACGGCATGC ATTTACTCGG TGAAACTCTT GATGTTAAAG AAGAATACCA TGTCATGTTC GCAGAGCGGA TGATCCAACA TCCGGCGGTG AAGCGTCTAT TAGAGACGGA TTTCAGTGAT TTATTTGCCG GATTAGACAG CCAAGTCCAG CAGTGCTAA
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Protein sequence | MLHLNYNHLY YFWMIKKKGS VAKAAEALCL APQTITGQIR ALEDRLNGSL FKRVGRNLEA TELGELVFRY ADKMFSLSYE MLDLLNYQKD DAILFEVGIA DALSKALASR VLLSVVPNDG SMHLACYEAT HESLMTRLRE HKLDMILSDC AGESLKYPEI LSKKLGECGV SFFSAETYSA DFPACLEQGQ LLIPGRRTSL GQQLYRWFDE QNLKVSILGE FDDAAMMKAF GYLKRGIFVT PSIYPQEVIS HGMHLLGETL DVKEEYHVMF AERMIQHPAV KRLLETDFSD LFAGLDSQVQ QC
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