Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2930 |
Symbol | rnc |
ID | 4257705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3472156 |
End bp | 3472836 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638123607 |
Product | ribonuclease III |
Protein accession | YP_738971 |
Protein GI | 114048421 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0449056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACCGA TTAAAAATTT GCCCCGTTTG TGTCGTACTT TGGGTTATGA GTTCAAGAAC CTTGAACTTC TGACTCAAGC GTTGACCCAC AGAAGTGCGG CAAATAAGCA CAACGAGCGG TTAGAGTTTT TAGGCGATTC GATTTTATCG ATTGTGATTT CAGACGCCTT ATACCATCAG TTTCCTAAGG CGACTGAGGG TGATTTGAGC CGGATGCGTG CCACCTTAGT GCGTGGCGAT ACGCTCACCT TGATTGCTAA GGCTTTTAAG CTTGGGGATT ATTTATTCTT AGGCCCCGGC GAGTTAAAGA GTGGTGGTTT TAGACGTGAG TCCATCTTGG CCGATGCGGT CGAGGCGATT ATCGGCGCAA TCTACTTAGA TTCCGATCTC GAAGTGTGCC GTAAGCTATT ACTGCATTGG TACGCTGAGC GTTTGGCCGA GATCCAACCC GGCGTTAATC AAAAAGACGC TAAAACCTTA CTGCAAGAAT ATTTACAAGG GTTAAAGAAG CCGCTACCCG ATTACCAAGT AATCAATATA GAAGGCGATG CCCACGATCA AACATTCACC GTTGAATGTC GTATAGATGA CTTGAGCGAA AGCGTGATTG GCGTAGCGAG TTCGCGCCGT AAAGCCGAGC AGATTGCCGC GGCTCAAGTA TTGGAGTTAC TGAAGAAATG A
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Protein sequence | MEPIKNLPRL CRTLGYEFKN LELLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ FPKATEGDLS RMRATLVRGD TLTLIAKAFK LGDYLFLGPG ELKSGGFRRE SILADAVEAI IGAIYLDSDL EVCRKLLLHW YAERLAEIQP GVNQKDAKTL LQEYLQGLKK PLPDYQVINI EGDAHDQTFT VECRIDDLSE SVIGVASSRR KAEQIAAAQV LELLKK
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