Gene Shewmr7_2831 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2831 
Symbol 
ID4255876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3353303 
End bp3356332 
Gene Length3030 bp 
Protein Length1009 aa 
Translation table11 
GC content49% 
IMG OID638123508 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_738872 
Protein GI114048322 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAAA GCATTTTTTT ACCCTTAGTA CAAAATGCGG CGTTATTGCT CGCTCTCGTG 
TTTTTATACG ATGCGATTCC TAAAAAGCAT CAGCGGCAGT ATTTTCTGCT GTGGCGGCTG
GGAATAGGAT TACTCATAGG TGGCATAGGC GTCACGATTA TGAGTACCCC ATGGATGTAC
GAGCCCGGCA TTATCTTCGA CACACGCTCA GTACTCTTAT GTGTTACCGG CCTCTTTTTT
GGTGGTTTGC CCACTGTGGT GGCGGTGATT ATCACAGGGG CTTATCGATA CAGCATTGGT
GGCGCCGCCA TGTGGGTTGG TCTGGCTGTG ATCATCTCCT CAGGCTTGAT TGGGGTGATA
TGGCGCCAAT ACCGTAAGTC CTATCTTGCC AATATTTCGG GCAGAGAAAT CTTCAGTTTT
GCCTTTGTGG TGCACATAGT GATGTTGCTG TGGTTTTTTC TGCTGCCGAG CCATGTTGCC
ATCCCCGTGC TGCAAAAAAT TATGTTGCCC GTGTTAACCA TTTACCCCCT TGCTACTTGG
CTACTGAGCC GTTTGCTCTC CCGCCGTTTT GAACTTGAGC GTGACGAGCA GATCCGTTTA
CAGGATGATT TTTTGTTCCG CAGCCAATTT AATGTTGGCA ACATTGGGAT TGCCATTACT
GGCGTCGACC AAAAGTGGAT CAAGGTAAAT CCAAGGCTGT GCCAAATGCT GAAGTACTCA
GAGGATGAGT TGCTGCATAT GACCTGGAAA CAGCTCACCC ATCCCGATGA TATAGAGGCC
GACATCGTCA AATTTGAGCT TATGCTTGCG GGTAAAATTG ATAACTATGA GATGGATAAA
CGCTTTATCG CCAAGGATAG CGCCATTGTT TATACCCATA TGACGGTGGC CTGTAAGCGC
GCGAACCATC AGGTGTTATT GGTGATTGCG GGCTACTTGG ATGTCACGGC GCAAACCCTA
GCCGATAGGG AAGTGCTCGC CAGCCGTGAG CAACTTGAGC TGGTATTAAG CAGTAGCGAC
TTGGGCGTTT GGGACTGGGA TATCCGCAAT GATCATATCG AGCGTAACGC CCGAAGCGCC
GATATTTTAG GTTGTGACAT CGATATGCTT AACGCCAATA GTCGCCAATG GATGGACTCG
ATTGTGCCCG AGGACAGGCC CAAGGTGCTG CACTCTATCG AAGCTCATAT TCGCGGGGAA
ACGCCGCAAC ATAAGATGGA ATATCGCTTA AAAACCCTCA ATCGTAATAT TCGTTGGATT
TTAGATACCG GCAAAGTCGT GAGTCGCGAT ACCAATAACA ATGCCTTGAG AATGTGCGGT
ACCTATACCG ATATTACCGA AGCTAAGCTG ATTGAAGAAT CCTTAAAGCT CTCAGCATTG
GTCTATGACA ACAGTTCTGA AGCCATGAGT GTGCTCGATG AAACGGGCGT TATTATCACA
GTCAACGCCG CCTTTACCGA GATCACTGGT TATAGTGAAT CGGAAATTCG CGGCCAGCAT
ATTCGCATGC TTTATTGCGA TCTCAACGGC CATGGTTTTT ATACCGAGAT GAATAATGAA
ATCCGCGAAA AAGGCGAGTG GCAGGGGGAA ATGCGCCAAC GACGTAAGAA CAATGAAGAG
TACGTTATTT GGCTGACCAT CAACACCATT AACGATAAAG ATGGCCAACC CTATCGCCGC
GTGGCGCTGT TTTCCGATAT CACAGATAAA AAGCAGAGTG AGCATCTGAT TTGGAAGCAG
GCTAACTATG ACACGCTCAC TGGTTTACCG AATCGGCGGA TGCTGCTCGA ATATTTGGGG
GCGGAAATCA GGAGCGCCGA CCGCAATCGT AATCATTTTG CCTTGATGTT CCTCGATTTG
GATTACTTTA AAGAGGTGAA TGACACCCTA GGCCACGCCA TGGGGGACCT GTTGCTGATA
GAAACCGCCA ATCGCTTAAA GTCCTGTGTG CGGGATGCCG ATGTGGTGGC GCGGCTCGGC
GGCGATGAAT TTACCGTAGT GCTCAGCGCT ATGGCGGATC ATAAGGGTAT TGAGCGGGTA
GCTGAGCACA TTTTAAGGCG CATTTCCGAG CCCTATGTGC TGGGTGAGGA GACCGCCTAT
ATCAGCGCCA GTATCGGGAT AACTCTGTAT CCCGATGATG CAACCAGCAT TGAAGGTTTG
CTCAAACATG CGGATCAGGC CATGTATGCG GCTAAAGATC AGGGGCGTAA TCGTTTCAAC
TACTTCACGC CTTCGATGCA GGAATATGCA AAGTATCGGA TGCGCTTAAT CCAAGATTTA
CGCCAAGCCG TTGTTAACAA AGAGTTTGAG TTGCATTATC AACCTATAGT GACTATGGGG
ACTGGTGAGG TCCTTAAGGC CGAAGCGCTT TTACGTTGGT TCCACCCCGA ACGTGGGCAG
GTTTCTCCAG CTGAGTTTAT ACCCGTTGCC GAAGATACTG GGCTGATTGT CGAGATTGGC
AATTGGGTTT TCGAGCAGGC GGCGCGCCAG AGCGCACAAT GGCGTAAAAC CCTTGGGGTC
GAGATCCAGA TCAGCGTTAA CAAGTCGCCT ATTCAGTTTC GCGATGAGGG CACGCTGCTG
CACAATTGGC TGGAGTTACT GCAGGAATTG GATGTGACAG GCACAGGCGT GTGCGTCGAA
ATTACCGAAG GACTCTTACT CGATGCCAGT ATGGGCGTGA CCGAAAAGCT TCTTGCCTAT
CGGGATGCGG GCGTACAAGT TTCTCTAGAC GACTTTGGCA CTGGCTATTC ATCACTGGCG
TATTTGAAAA AATTCGATAT CGACTATTTG AAAATCGATC AATCTTTTAC CCGTCATATC
GACACGGATG AAAGCGACCA AACCCTGTGT GAGGCGATTA TCGTTATGGC CCATAAGTTA
GGAATGAAAG TGATTGCCGA AGGGGTTGAA ACCGAGGCGC AGCGCCAAGT GTTGCTTAAT
GCGGGCTGTG ACTATGGCCA AGGCTATTTA TTCTCTAAAC CGGTGAGTGC GGCTGAGTTT
GCAAGCCAGT ATTTGCTCAA AGAGGCGTAG
 
Protein sequence
MDKSIFLPLV QNAALLLALV FLYDAIPKKH QRQYFLLWRL GIGLLIGGIG VTIMSTPWMY 
EPGIIFDTRS VLLCVTGLFF GGLPTVVAVI ITGAYRYSIG GAAMWVGLAV IISSGLIGVI
WRQYRKSYLA NISGREIFSF AFVVHIVMLL WFFLLPSHVA IPVLQKIMLP VLTIYPLATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF NVGNIGIAIT GVDQKWIKVN PRLCQMLKYS
EDELLHMTWK QLTHPDDIEA DIVKFELMLA GKIDNYEMDK RFIAKDSAIV YTHMTVACKR
ANHQVLLVIA GYLDVTAQTL ADREVLASRE QLELVLSSSD LGVWDWDIRN DHIERNARSA
DILGCDIDML NANSRQWMDS IVPEDRPKVL HSIEAHIRGE TPQHKMEYRL KTLNRNIRWI
LDTGKVVSRD TNNNALRMCG TYTDITEAKL IEESLKLSAL VYDNSSEAMS VLDETGVIIT
VNAAFTEITG YSESEIRGQH IRMLYCDLNG HGFYTEMNNE IREKGEWQGE MRQRRKNNEE
YVIWLTINTI NDKDGQPYRR VALFSDITDK KQSEHLIWKQ ANYDTLTGLP NRRMLLEYLG
AEIRSADRNR NHFALMFLDL DYFKEVNDTL GHAMGDLLLI ETANRLKSCV RDADVVARLG
GDEFTVVLSA MADHKGIERV AEHILRRISE PYVLGEETAY ISASIGITLY PDDATSIEGL
LKHADQAMYA AKDQGRNRFN YFTPSMQEYA KYRMRLIQDL RQAVVNKEFE LHYQPIVTMG
TGEVLKAEAL LRWFHPERGQ VSPAEFIPVA EDTGLIVEIG NWVFEQAARQ SAQWRKTLGV
EIQISVNKSP IQFRDEGTLL HNWLELLQEL DVTGTGVCVE ITEGLLLDAS MGVTEKLLAY
RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRHI DTDESDQTLC EAIIVMAHKL
GMKVIAEGVE TEAQRQVLLN AGCDYGQGYL FSKPVSAAEF ASQYLLKEA