Gene Shewmr7_2741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2741 
Symbol 
ID4258741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3248039 
End bp3249736 
Gene Length1698 bp 
Protein Length565 aa 
Translation table11 
GC content51% 
IMG OID638123419 
Producthypothetical protein 
Protein accessionYP_738783 
Protein GI114048233 
COG category[I] Lipid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
[COG2453] Predicted protein-tyrosine phosphatase 
TIGRFAM ID[TIGR00147] lipid kinase, YegS/Rv2252/BmrU family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAGTA GGATCCACAT TAAGTATTTC TACCTGTTCG GAGCGCTGTT ATTTGGCTAT 
TTCGCCGTAA CGGGGCACTC CCCTATCCTC ACCTTTATTT GGGCATGGAG CAGCCTATCC
CTCGCCCTTG TCGGCTCTGC CTATTGGTTT AATCTCGCCA GTATTTTTAG AAAACGTCAG
GATGGTTCCA TCCCTTGGTA TATTCGTTGG GGCTTTATTC CATTTTTATT AGGATGCCGA
CTCTATAATC TCTGGGCACG GCACCGTGAT AGCGTGCCTT CTATGCAAGC CATTGATAAA
TATCTGTACT TGGGTAGCCG CTTAAGCGCT GCCGATTTAC CTAAACTGAA TCGTTATGGC
ATTACCGCTA TTTTAGATGT CACCGCCGAA TTCGACGGCC TCGATGTGTC CCTGTATGAG
GATCATATCG ACTATCTGAA TATCCCTATT CTTGACCACA GTGTGCCAAC TAGCGCCCAA
TTAAATCAGG CGATTAACTG GTTACACCGT CAAGTACGCG CCCAAAAGCG GGTATTAATC
CACTGCGCGC TCGGCCGCGG GCGCTCCGTA ATGGTGCTGG CCGCTTATCT TGTATGCCGC
CACCCCGAGC TCAGCTTCGC CGAGGTACTG CAACAGATTA AAAGCATTCG TAAAACCGCA
GGCTTAAATC GCTGGCAACT TAAAGCGCTG GAGCAGATGT ACACTCAAGG GGAAATCAAA
CTGCATAAGC GAGCCTGGAT TATCGCCAAT CCCGTCTCTG GCGCGGGTAA ATGGCAAAGC
CATGGCGAAC AAATTTGCAC TGAACTGAAA CGCTATTTTG AGGTGCAGTT AGCACTCACC
ACACCTGAGA TTAGCGCCCA AACCCAAGCC AAAAAAGCAC GGCTTCAGGG CGCCGATATC
ATCATCGCTT GCGGGGGCGA TGGCACAGTC ACTGAGGTCG CGGCGGAGAT TATCGACACC
GATATCACCT TAGGCATTAT CCCGCTAGGC ACCACCAATG CCCTGTCACA CGCCCTCTTT
GGTTTAAGCA GTAAGCTCTA TGCCGTCTCC CAAGCCCTTG ATAATATTAT CCAAGGCCAG
ACACAGACCA TAGACACGGC GCGTTGCAAT GAGCGACTGG TGTTACTGCT GGTCGGCATT
GGGTTTGAGC AGCAAATGAT TGAGTCGGCG AGCCGCGAGC GTAAAAATGC CCTCGGCCAA
CTCGCCTACC TAGATGGTTT GTGGCGCGCG GTGAACACCG ACACCAACCT CGAGTTGCAG
CTGACTTTAG ATGACCAAAC CCCAATGACA GTGCAAACCC ACAGCCTAGT GGTTGCCAAT
GCCGCACCTT TTACCAGCTT ACTCGCCCAA GGTAAGGGCG AACCCAATAT GACCGACGGC
TTGTTGGATA TCACTTGGTT AGATTCAAAT AATGAGCCGA ATGAACAACT TATCAGTCTG
GTTGAACTGG CTTTTACTGG CTGGATTAAA GAGGCCGCCA ATAGCGACTC TGCGGCCACG
GGCAACACGG GTAAAGTGAA ACATGCCCAC GCGAAAAAGG TGAAGATCAG CAGTCAGCCC
CAATGCAAGT ATGTGATTGA TGGCGAGATT TGTGAGCCGG AGGAACTCAA TATCGATATC
CTGCCCGCCT CTTTGAAGGT GTTTGTGCCC TATCAAGCGC AAAATGCTGA ACCGCAGTCA
GAATCAAAAA TAAGCTAA
 
Protein sequence
MLSRIHIKYF YLFGALLFGY FAVTGHSPIL TFIWAWSSLS LALVGSAYWF NLASIFRKRQ 
DGSIPWYIRW GFIPFLLGCR LYNLWARHRD SVPSMQAIDK YLYLGSRLSA ADLPKLNRYG
ITAILDVTAE FDGLDVSLYE DHIDYLNIPI LDHSVPTSAQ LNQAINWLHR QVRAQKRVLI
HCALGRGRSV MVLAAYLVCR HPELSFAEVL QQIKSIRKTA GLNRWQLKAL EQMYTQGEIK
LHKRAWIIAN PVSGAGKWQS HGEQICTELK RYFEVQLALT TPEISAQTQA KKARLQGADI
IIACGGDGTV TEVAAEIIDT DITLGIIPLG TTNALSHALF GLSSKLYAVS QALDNIIQGQ
TQTIDTARCN ERLVLLLVGI GFEQQMIESA SRERKNALGQ LAYLDGLWRA VNTDTNLELQ
LTLDDQTPMT VQTHSLVVAN AAPFTSLLAQ GKGEPNMTDG LLDITWLDSN NEPNEQLISL
VELAFTGWIK EAANSDSAAT GNTGKVKHAH AKKVKISSQP QCKYVIDGEI CEPEELNIDI
LPASLKVFVP YQAQNAEPQS ESKIS