Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2693 |
Symbol | dnaE |
ID | 4256054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 3185302 |
End bp | 3188778 |
Gene Length | 3477 bp |
Protein Length | 1158 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638123371 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_738735 |
Protein GI | 114048185 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00112631 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTTCGT GTCCACAGTG ACTTCTCTAT GTCCGATGGT GTGGCTAAGG TCAAACCCAT CCTCGCCCAA GTTGAGGCTA AGGGTATGGC TGCGGTGGCC TTAACGGATC AAAACAACCT CTGCGGTCTG GTCAAGTTTT ATGGTGGTTG CCATGGTGCG GGGATTAAGC CGATTATTGG CGCGGACTTT TGGATGCAAG TGCCGGGGTT TGATGACGAG TTTTGTGCCT TAACCATTAT TGCGATGAAT AATGATGGCT ATCAAAATCT CACCCAAATC ATCAGCCAAG CCTATCTACG GGGCCATGTG GCTGGGCGGG TGGTGATTGA CCAAGAGTGG CTTGTCACCT ACAACGAAGG CATTTTATTG CTGTCTGGTG GGAAAGAAGG GGACGTGGGT AAGGCGCTGC TTAAGGGCAA CAATACTCAA GTCGAGTCCT TATGCGAGTT TTATCAGCAA CATTTTGAAG GGCGTTATTA CCTCGAATTA TTGCGCACGG GGCGCCCTGA TGAGGAGCGT TACCTGCATA TGGCGGTGGG GCTCGCGCAG GAAAAGGGCA TTCCCGTGGT CGCCACCAAT CAGGTGGTAT TTTTAAAACC CGAAGACTTC GAGGCCCATG AGATCCGCGT TGCGATCCAC GATGGTTTTA CGCTTGCCGA TCCCCGCCGG CCTAAAAAAT ACAGCGAGCA GCAGTACCTT CGCAGTGAAG AGGAAATGTG CGAGCTGTTT GCTGACATTC CTGCCGCGCT CGAAAATACC GTTGAAATCG CCAAGCGTTG CAACGTTACC ATTCGCTTAT ACGAATACTT CTTACCGAAT TTCCCCACCG GCGATATGTC GATTGAGGAT TTTCTAGTTG ATTGCTCTAA GAAGGGGCTC GAAGAGCGTT TAGAGTTCTT ATTCCCCGAT CCACAAGTGC GCGCCGAGCG CCGCGGTGAA TATGACGAGC GTCTCGATGT GGAGCTTAAG GTTATCAACC AGATGGGCTT CCCCGGTTAC TTCCTTATCG TAATGGAGTT TATCCAGTGG GGTAAGGATA ACGGCATTCC TGTGGGGCCT GGCCGTGGTT CGGGCGCTGG CTCGCTTGTG GCCTATGCCC TTAAGATTAC CGACTTAGAC CCCTTAGAAT TCGACCTGCT GTTCGAACGT TTCTTGAACC CAGAGCGGGT ATCTATGCCC GACTTCGACG TCGACTTCTG TATGGATAGA CGCGATGAGG TGATTGACCA CGTGGCCGAA CTCTATGGCC GTGAGGCGGT ATCACAGATC ATTACCTTTG GTACCATGGC GGCCAAGGCG GTTATCCGCG ACGTGGGTCG TGTACTCGGC CATCCCTATG GCTTTGTGGA CCGCATTTCT AAGCTTATTC CTCCAGAGCC TGGCATGACA CTCGCCAAGG CCTTTGAGGT GGAACCTGCG CTGCAGGAGT CCTACGATGC CGATGAGGAT GTGAAAGATC TTATCGACAT GTGCCGTAAA CTCGAGGGGG TGACCCGTAA CGCCGGTAAG CATGCGGGGG GCGTGGTGAT TGCGCCCACC AAGATCACCG ACTTCTCGCC GCTTTATTGC GACGCCGAAG GTAAAAACCC GGTAACCCAG TTCGATAAGA ACGACGTGGA AACCGCCGGC TTAGTCAAAT TCGACTTCTT AGGGTTAAGA ACCCTCACCA TCGTCGACTG GGCGCTGGAG ATGATCAACA AGGTGGAGGT TAAAAACGGC CGTCCACCGG TGCGGATTGA GGCGATTCCC CTAGACGACC CAGCTTCGTT CCGCTTGCTG CAACGCTATG AAACCACCGC GGTATTCCAG CTCGAATCCC GTGGTATGAA GGATTTGATT AAGCGTCTGC AACCCGACTG TTTCGAAGAT ATGATCGCAC TCGTGGCATT GTTCCGCCCG GGGCCTCTGC AGTCGGGCAT GGTGGATAAC TTTATCGAGC GTAAGCATGG TCGTGAAGAG GTGTCTTACC CTGATTCTCA ATACCAGCAT GAATCCTTGA AGGAGCTGTT GTCGCCCACC TACGGCATTA TTTTGTACCA AGAGCAGGTG ATGCAGATTG CGCAGGTGCT ATCGGGTTAT ACCTTAGGCG GCGCGGACAT GCTGCGCCGC GCTATGGGTA AGAAAAAGCC CGAGGAGATG GCCAAACAGC GCGGTACCTT TAAAGAAGGG GCGATTAAGA ACGGCGTCGA TGGCGAGTTG GCGATGAAAA TCTTCGACTT AGTGGAAAAG TTTGCGGGCT ACGGCTTTAA CAAATCCCAC TCCGCTGCGT ACGCGCTCGT GTCCTATCAA ACCCTGTGGC TCAAGACTCA CTTCCCGTCG CAGTTTATGG CGGCGGTAAT GTCTGCCGAT ATGGACAACA CAGACAAAAT CGTCACCCTA GTGGATGAAT GTGAGCGCAT GGGACTCACC ATTATTCCGC CGGATGTGAA CAAAGGTCTG TTTAAGTTTA CCGTCGATGA TGATCTGCGT ATCGTTTACG GCATCGGCGC CATCAAAGGT GTGGGTGAGG GGCCGGTTGA GTCGATTCTT GAGGCGCGTA AGGACGGCCC CTTTAAAGAT TTATTCGACT TTTGCGCCCG TATCGATCTT AAAAAACTTA ACAAACGGGT GATTGAAAAG CTTATCTGCG CGGGTGCCTT AGATGCGCTT GGGCCGCACC GCGCCTCTAT GATGGCCACC TTGCCCGAGG CGATAAGCGC CGCCGATCAG CATGCGAAGG CCGAGGCCAT TGGCCAGCAT GATATGTTTG GTCTGCTTAA CAGTGACCCT GAGGACAGCA AGCAACAGTT TGTCGAATGC ACTCCGTGGC CCGATAAAAT TTGGCTCGAA GGGGAGCGTG AGACCTTAGG TCTATATTTA ACTGGTCACC CGATTAATCA ATACCTTAAA GAGCTTAAGC ATTACACCTC TGGGCGCTTA AAGGATGTGC ATCCAACCGA TCGCGGCAAA ACCGTGAAGG CGGCAGGCCT TGTGGTTGCA ACTCGGGTGA TGCTCACTAA GCGTGGATCG AAAATGGGCC TGCTGACGCT AGATGACAAG AGTGCACGCC TCGAGGTGAT GCTCTTTACC GAAGCTTTTG AGAAGTTTAA CCATCTGCTC GAGAAGGACA GGATCCTGAT CTGCGAAGGT GAAGTCAGCT TCGATGATTT TGCCGGTGGC AACCGCATGA CGGCGCGCAA TATTATCGAT ATCAGCGAGG CGCGCAGCCA CTTTGCCAGC GCCTTAGAAA TCGATTTAGA CGCATCGCAG TTAAATCCAA GCGTGCTCGA AAGTATCGAG CAATCGATAA GCCCGTGGCG CAACGGTGCC GTACCCGTGG TGATTAACTA CAGTCAAGCG CAGGCCAAGG GCCAATTTAG GTTGGCGGAA CATTGGCGAG TCAACCCCAG CGATGAATTG GTTTTTGCCC TTGAGAGCCT CTTGGGGCCA AATAAGGTGC GGATCCTGTT CCCCTAA
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Protein sequence | MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEAKGMAAVA LTDQNNLCGL VKFYGGCHGA GIKPIIGADF WMQVPGFDDE FCALTIIAMN NDGYQNLTQI ISQAYLRGHV AGRVVIDQEW LVTYNEGILL LSGGKEGDVG KALLKGNNTQ VESLCEFYQQ HFEGRYYLEL LRTGRPDEER YLHMAVGLAQ EKGIPVVATN QVVFLKPEDF EAHEIRVAIH DGFTLADPRR PKKYSEQQYL RSEEEMCELF ADIPAALENT VEIAKRCNVT IRLYEYFLPN FPTGDMSIED FLVDCSKKGL EERLEFLFPD PQVRAERRGE YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RPPVRIEAIP LDDPASFRLL QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM AKQRGTFKEG AIKNGVDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPS QFMAAVMSAD MDNTDKIVTL VDECERMGLT IIPPDVNKGL FKFTVDDDLR IVYGIGAIKG VGEGPVESIL EARKDGPFKD LFDFCARIDL KKLNKRVIEK LICAGALDAL GPHRASMMAT LPEAISAADQ HAKAEAIGQH DMFGLLNSDP EDSKQQFVEC TPWPDKIWLE GERETLGLYL TGHPINQYLK ELKHYTSGRL KDVHPTDRGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSFDDFAGG NRMTARNIID ISEARSHFAS ALEIDLDASQ LNPSVLESIE QSISPWRNGA VPVVINYSQA QAKGQFRLAE HWRVNPSDEL VFALESLLGP NKVRILFP
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