| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2577 |
|---|
| Symbol | |
|---|
| ID | 4256659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3044885 |
|---|
| End bp | 3047080 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638123255 |
|---|
| Product | decaheme cytochrome c |
|---|
| Protein accession | YP_738619 |
|---|
| Protein GI | 114048069 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00883016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00925289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC GGTTCAATTT CAATACCGCA ACAAAAGCGA TGTTGGGTGC CGGTTTACTT
TCACTTCTTC TCACTGGTTG TGGTGGCAGT GATGGTAAAG ATGGTGAAGA CGGTAAACCA
GGCGTTGTTG GTGTTAATAT CGACTCAACC TCAACGTTAC AAGCGAAATT CACAAATGCC
ACTGTTGATG CTGGCAAAGT CACCGTTGAT TTTACATTGG AAAATGCCAA TGGTGTGGCC
GTACTCGGCT TAACGAAAGA TCACGATTTA CGATTCGGAA TTGCTCAGCT CACCCATGTG
ACTGAAGCAA CGGACGATCC AGCTAAACCA GCGGATCGCG GCTATCAATG GCAAGCCTAT
ATCAATGCCA AAAAAGAGCC AGGTACAGTT CCATCAGGTG TCGATAACCT AAATCCATCG
GCCCAATACC AAGCCAACGT GGAAGCGGCA AATAAATGCG ACACTTGCTT AGTTGACCAC
GGTGACGGTA GCTATAGCTA CACCTATCAG GCCAACATTG CCAATGTAAC TGAGCCACTC
ACAGTCACTT ACAGTGCCGA TGCGACTCAA CGCGCCACAA TGGAGCTGGA TTTACCACAG
GTTGTGGCCA ACGCCCATTT CGATTGGCAA CCCTCTACAG GTAAGACGGA AGGCATTCAA
ACCCGCAATG TGGTTTCTAT TCAAGCCTGT TATACCTGTC ACCAACCAGA AAGCTTAGAG
CTGCATGGTG GTCGTCGTAT TGATCTTGAA AACTGTGCTT CTTGCCATAC TGCAACCTCT
GGTGACCCAG AGTCAGGCAA TAGCATTGAA TTCACTTACA TGATCCATGC TATCCACAAA
GGCGCTGAAC GCCATACCTT CGATGAAACT GGCGCAGAAG TACCAGCACC TTACAAGATT
GTCGGTTACG GTGGTTCATT ACACGACTAC GGCAAAGTAA CTTTCCCATT AAAACCTGCC
GCGGACTGTT CTGCATGTCA CGTTGAAGGT GCGGGAGCGC CTGCGAATGC CGACCTCTTC
AAAGCAGATT CAAGCAATCA AGCTTGTATT GCTTGTCACA CCGAAAAACC ATCTTCACAC
CACAGCAGCA CAGATTGTAT GTCTTGCCAC AATGCGACCG AGCCTTACGG CGGTACTGGC
AGTGCGGCTA AACGCCATGG TGATGTACTG AAAGCCTATT CTGATACTCA AGCAATGGGC
ATTAAGTTCA GCAATGTGGG AGTGAATGAC ACTGGTAAGA TTACCTTTGA TGTTCAAGTC
GTTGATAAAG ATGGCAATGC TATCGATAAA AAATATGTAA ACCAAGGCTC ACGCGTTGTT
GTGGCATGGG ATTCTAATAA AGATTACCCA AGCTATGCAG ATGCCTCTTA CAGCAACCGT
CGTATCGCAC TGAACGAAGG CACTTACAAT GAAACGACCA AAACCTACAC GTTAACTGGC
ACTAAGTTCA GCCTGCCAGC GGATGCTAAC GGTAAAACCT TTGAACTCTG GTCAGCATTA
GAAGTGTGTT TCAACAACGG TGGTTACGGT GTTGCCGAAA TCGTTACAAC CGATTGTAGT
GCTGAGAACG TACGTAAAGT GCCCGTAAAA GAAGCCCCTT ACCACTTCGT TTGGAAAGAC
AATGGTGTAG ATAGCGCTAC CTCTCCAGCT AGCCGTCGCC CTATTGTTGA CACATCGAAT
TGTCAAGGCT GCCATAATCA ACAAGTTCTG CATTACGATA ACGGTGTAAA CTGCCAGACT
TGTCATACCC CAGACAAGGC GCTTAAAGAG ACTGTACGCA ATTCAGGTAA GTTTGATCAA
GCAACCAGCT TTGCTTGGAA AGCCCATGAA GCAGAAGGTC ACTATCTGAA ATATGCTGGC
GTTCAATCAG GCACTGTTCT TAAGAGCGAT TGTGCAACTT GCCACGTCGA AAAAAGCGGT
GTCGTCACAG GTATTGAACT TGGCCGCGCT CCTGAGCGCA CATGGATTTA TCCAAACACA
ACGACCTATG ACAAAACGGG TATTTGGGTA TCTTCTGATG CGGGTGCATG TTTAAGTTGT
CACCAGAAGT ATCTGTCAGA TGCGGCTAAG TCTCACATTG AAGCTAACGG TGGTATCTTA
GATGGTACTA GTGCTGCCGA TGTTAAAACC CGTGCCTCTG AAAGCTGTGC GACTTGTCAT
ACTCCAGCGC AATTAATGAA AGTACACGGA AACTAA
|
|---|
| Protein sequence | MMKRFNFNTA TKAMLGAGLL SLLLTGCGGS DGKDGEDGKP GVVGVNIDST STLQAKFTNA
TVDAGKVTVD FTLENANGVA VLGLTKDHDL RFGIAQLTHV TEATDDPAKP ADRGYQWQAY
INAKKEPGTV PSGVDNLNPS AQYQANVEAA NKCDTCLVDH GDGSYSYTYQ ANIANVTEPL
TVTYSADATQ RATMELDLPQ VVANAHFDWQ PSTGKTEGIQ TRNVVSIQAC YTCHQPESLE
LHGGRRIDLE NCASCHTATS GDPESGNSIE FTYMIHAIHK GAERHTFDET GAEVPAPYKI
VGYGGSLHDY GKVTFPLKPA ADCSACHVEG AGAPANADLF KADSSNQACI ACHTEKPSSH
HSSTDCMSCH NATEPYGGTG SAAKRHGDVL KAYSDTQAMG IKFSNVGVND TGKITFDVQV
VDKDGNAIDK KYVNQGSRVV VAWDSNKDYP SYADASYSNR RIALNEGTYN ETTKTYTLTG
TKFSLPADAN GKTFELWSAL EVCFNNGGYG VAEIVTTDCS AENVRKVPVK EAPYHFVWKD
NGVDSATSPA SRRPIVDTSN CQGCHNQQVL HYDNGVNCQT CHTPDKALKE TVRNSGKFDQ
ATSFAWKAHE AEGHYLKYAG VQSGTVLKSD CATCHVEKSG VVTGIELGRA PERTWIYPNT
TTYDKTGIWV SSDAGACLSC HQKYLSDAAK SHIEANGGIL DGTSAADVKT RASESCATCH
TPAQLMKVHG N
|
|---|
| |