| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2473 |
|---|
| Symbol | |
|---|
| ID | 4256362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2926545 |
|---|
| End bp | 2927291 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638123148 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_738515 |
|---|
| Protein GI | 114047965 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000591891 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00615598 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTGT CAGAGAGTCA TTCAACCCAA CGAAAATATG ATTTAGTGAT TTTTGATTGG
GATGGCACGT TAATGGATTC CATCGGCAAG ATTATTGTTT GCATTGAGAA TATGGCAAGG
GCGCTGGCGT TACCTGTGCC ACCTGAAGCA GATATTCGCA ATGTGATTGG CTTGTCGATG
ACGCAGGCGT TACAGGTGTT ATTTCCCGAA GGTTTGACTT CAGTGCCGCC GCTTAACGGA
TGTGCAAGCC GTGCGGCACA AGCGGGGGCG ACTCAAGCGC TTGTTGGCAC CGATGATTGC
TATATTAAGA TGCGCGCCGA GTTTAAGACG CAGTATTTGC ACCTTGATAC CACGCCAACG
CCGATTTTTA ACCAAGCCCC CCAATTACTC GAGTCGTTAT CTGTAAAGGG TTATCAGCTT
GCTGTTGCAA CGGGTAAGGC GAGAGCAGGG CTGGTGCGCG TGTGGGAGCA ATCTGGATTA
GGCCATTACT TTAGTGCTTC TCGCTGCGCC GATGAGGCAC AGAGTAAACC CCATCCCGAA
ATGATCCAAA GTCTGCTGCA AGAATTGGGC ATTCCGCCCG AGCGAGCTTT AATGGTCGGT
GATTCTTTGC TGGATTTAAC CATGGCCGCA AATGCGGGAA TCGACAGTGT GGGTGTAACC
TACGGCGCCC ATAGCGAAGA TATGCTTCAG CAAGCGGATC CCATCGCCTT GATAGACTCG
CCTGAAAAAC TGTTGCTGCA TTTATAA
|
|---|
| Protein sequence | MKVSESHSTQ RKYDLVIFDW DGTLMDSIGK IIVCIENMAR ALALPVPPEA DIRNVIGLSM
TQALQVLFPE GLTSVPPLNG CASRAAQAGA TQALVGTDDC YIKMRAEFKT QYLHLDTTPT
PIFNQAPQLL ESLSVKGYQL AVATGKARAG LVRVWEQSGL GHYFSASRCA DEAQSKPHPE
MIQSLLQELG IPPERALMVG DSLLDLTMAA NAGIDSVGVT YGAHSEDMLQ QADPIALIDS
PEKLLLHL
|
|---|
| |