| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2263 |
|---|
| Symbol | rbgA |
|---|
| ID | 4256030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2682380 |
|---|
| End bp | 2683321 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122933 |
|---|
| Product | ribosomal biogenesis GTPase |
|---|
| Protein accession | YP_738308 |
|---|
| Protein GI | 114047758 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1161] Predicted GTPases |
|---|
| TIGRFAM ID | [TIGR03596] ribosome biogenesis GTP-binding protein YlqF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTC AATGGTATCC GGGGCACATG CACAAGGCAC GCAAAGAGAT CGAAGAGGCT
ATGCCTCAGG TCGATCTGGT GATTGAGGTG CTGGACGCCC GTATTCCCTA CAGTAGTGAA
AACCCCATGG TGTCAAAGCT TCGCGGCGAC AAACCTTGTA TTAAGCTACT GAATAAATCC
GACTTAGCCG ATCCTGACAT CACCGCCCAA TGGATTGAAT ACCTTGAGCG TGAACAAGGG
GTAAAAGCCA CTGCGATTAC TACACTGCAA CCGGGTATGT TGAAAATGCT GCCGGATCTT
TGCCGTAAGT TAGTGCCGAG TCGCGATAAG ACCGAAAAAG ATATTCGCAC TATGATCATG
GGGATCCCTA ACGTGGGTAA GTCCACCATT ATCAACACCT TAGCCGGTCG TGTTATCGCC
AAAACCGGTA ATGAACCCGC CGTCACTAAA AGCCAGCAGC GCATTAACCT ACGCAACGGC
ATTGTGCTCT CGGACACACC AGGGATTTTA TGGCCTAAAG TCGATAACGA AGCCAGTAGC
TATCGTCTCG CCGTCACGGG TGCCATTAAA GATACCGCCA TGGAATACGA AGATGTGGCA
CTGTTTGCCG CAGGTTATTT CTTAAAGGCG TACCCGAAGG AAATTTGCGA GCGTTATAAC
ATCAGCGAAT TACCTAAGGA TGATATGGCG TTACTCGAGG AAATTGGCCG TAAACGCGGT
GCCCTGCGTC CCGGTGGTCG CATCGATTTG CATAAAGCCT CGGAAGTCGT GTTACACGAT
TACCGCTCAG GTCGAATTGG CCTGTTATCC CTCGAAACCC CTGCGATGGC CGAAATAGAA
AAAGCCGAAG TGGAACGCAT TCTGGCTGAA AAAGCCGCCG AGAAAGCCGC TAAGCTAGAA
GCGGAAAAAC TGAAACGCTC AGGAAAACGA CATAACGTTT AA
|
|---|
| Protein sequence | MAIQWYPGHM HKARKEIEEA MPQVDLVIEV LDARIPYSSE NPMVSKLRGD KPCIKLLNKS
DLADPDITAQ WIEYLEREQG VKATAITTLQ PGMLKMLPDL CRKLVPSRDK TEKDIRTMIM
GIPNVGKSTI INTLAGRVIA KTGNEPAVTK SQQRINLRNG IVLSDTPGIL WPKVDNEASS
YRLAVTGAIK DTAMEYEDVA LFAAGYFLKA YPKEICERYN ISELPKDDMA LLEEIGRKRG
ALRPGGRIDL HKASEVVLHD YRSGRIGLLS LETPAMAEIE KAEVERILAE KAAEKAAKLE
AEKLKRSGKR HNV
|
|---|
| |