| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2211 |
|---|
| Symbol | |
|---|
| ID | 4255942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2621696 |
|---|
| End bp | 2623693 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122879 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_738256 |
|---|
| Protein GI | 114047706 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACGTC ACAGTCTACT CTTCGCCCTT GTGTTAACCG CCTCTTCTCC CTTATGTGTT
TCGGCACAGA CCAACAATAG CCCTGTCAGC AGTACAGCAT CTTTTCATCT CGAACCGCTC
TCTTGGTGGG CGGGCATGCA TAATCCTAAG CTGCAACTGA TGCTCCACAG CGATGCTCTG
CCCGCGGATG CGACGCAACT TAAGGTTGAG ATTACTGGCC AAGATGTGGT GTTTGAAGGA
ATAGAACAGA CGGATAACCC CCATTATTTG TTTATCAATT TAGATTTGCG CCAAGCCAAG
CCGCAGACCT TTGATATCCG CATTCTCGCT GGCGACAAGC AACTCTTCCA ACTGCCCTAC
ACTTTAGATG CTCGAGCTGA TGGCAGCCGC GAACGCCAAG GTTTTAGCAA TAAAGATGTG
ATTTACCTTA TCACCCCAGA CCGATTCGCC AATGGCAACC CAAGCAATGA CAATCAAGCC
GATATGCTCG AGCATGCGGC GCTTGATAAT TCCGATGGTC GCCATGGCGG CGATATCGAA
GGTATACGCC AGCACTTAGA TTACTTAGCC AAACTGGGCG TCACTCAGCT GTGGATCAAC
CCACTGCTCG AAAATAACCA AGCCCAATAC TCCTATCATG GTTACGCCAT TACCAATCTC
TATCGGGTCG ACCCGCGTTT TGGCAGCAAT CAGGATTACC AAAAGTTAGT CACAGAGGCC
AAACAACGTG GTCTTGGGGT GATTAAAGAC GTGGTGCTTA ACCATATCGG CTCAAACCAT
TGGTGGTTAA AGGATTTACC GAGCAGTGAC TGGCTTAATT ACCCACTAAA GCCCGATACA
ACTGACGCCA AAACGGCTCC AGCCGCCAGT TCTACGAGCC CGAGTTCTAC CAGCCCGAGT
TTTACCAGTC ATAGACGCAC CACAGTGCAA GATCCCTACG CCGACACACA GGATAAAAGT
GACTTTGTCG ACGGTTGGTT TGTCGATTCG ATGCCCGATC TCAATCAGCG CAACCCAAAA
CTTGCGACTT ATCTAATTCA AAACAGCATT TGGTGGGTAG AATACGCAGG GCTTTCGGGC
ATTCGCGAAG ACACCTATTC CTACGCCGAT AAAACCTTTT TAGCCCAATG GTCAAAGGCC
TTAATGGCCG AATACCCACA TTTTAATATT GTCGGCGAAG AGTGGACCGC CAATCCCATT
ACCGTCTCCT ATTGGCAAAA AGGCAAAATC AATGCCGATG GCTATACCTC AGATTTACCT
AGCCTGATGG ACTTTCCGCT CTATGAAAAG CTGGTTGAAA GCCTAAATGA GCCAGAAGGC
TGGGATACTG GTTTTATCAA GCTTTACGAG ATGTTAGCGA ATGATGTGGT GTATGCAAAC
CCAAGCCAGT TAGTCCTCTT TGAAGGCAAC CACGACACCA ATCGGATTTA TAGTCTGCTG
AAAGAAAACC TGCCGCTGTA CCAAATGGCC CTCACCTATG TGTTAACGGC CAAACGCATT
CCACAGCTGT TTTACGGCAC AGAAGTATTA ATGACCAGCC CAACCGAAGG CCGCCACGAC
GGTGTAGTGC GTAGCGATTT TCCGGGTGGC TTTGCCAATA ACAAGGTAAG CGGTTTTAGC
GGTAAAGGGC TAAACGCAAA ACAGCAACAA GCGCTTGCGT TTGTACGCAC CCTACTCAAT
TACCGTAAAC ATTCAGCCGC GCTGCAAACG GGCGATTTAC TGCACTTTGT GCCGCAAAAC
GGCGTTTATG TGCAATTTCG ATGCGCGGCA AAACACCCCA CAGCGGGCAA TGCCTGCTAT
CAAGCCGATG CGGATAAAGT GATGGTGATT TACAACAAGA ATGACCAAGC ACAAACGCTC
GATTTAAGCC GATTTCGTAA GGTATTGGCG GGTAATACCT CGGCAAACTC AGTCTTCACA
GGTGATAAGT TCAAGCTTAA TCAATCAGTT ACTCTGCCCC ATGCTGGCGT TATGTTGCTT
GAGCTTAATC ACCTATAA
|
|---|
| Protein sequence | MIRHSLLFAL VLTASSPLCV SAQTNNSPVS STASFHLEPL SWWAGMHNPK LQLMLHSDAL
PADATQLKVE ITGQDVVFEG IEQTDNPHYL FINLDLRQAK PQTFDIRILA GDKQLFQLPY
TLDARADGSR ERQGFSNKDV IYLITPDRFA NGNPSNDNQA DMLEHAALDN SDGRHGGDIE
GIRQHLDYLA KLGVTQLWIN PLLENNQAQY SYHGYAITNL YRVDPRFGSN QDYQKLVTEA
KQRGLGVIKD VVLNHIGSNH WWLKDLPSSD WLNYPLKPDT TDAKTAPAAS STSPSSTSPS
FTSHRRTTVQ DPYADTQDKS DFVDGWFVDS MPDLNQRNPK LATYLIQNSI WWVEYAGLSG
IREDTYSYAD KTFLAQWSKA LMAEYPHFNI VGEEWTANPI TVSYWQKGKI NADGYTSDLP
SLMDFPLYEK LVESLNEPEG WDTGFIKLYE MLANDVVYAN PSQLVLFEGN HDTNRIYSLL
KENLPLYQMA LTYVLTAKRI PQLFYGTEVL MTSPTEGRHD GVVRSDFPGG FANNKVSGFS
GKGLNAKQQQ ALAFVRTLLN YRKHSAALQT GDLLHFVPQN GVYVQFRCAA KHPTAGNACY
QADADKVMVI YNKNDQAQTL DLSRFRKVLA GNTSANSVFT GDKFKLNQSV TLPHAGVMLL
ELNHL
|
|---|
| |