Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2115 |
Symbol | |
ID | 4258101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2499348 |
End bp | 2500817 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638122783 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_738160 |
Protein GI | 114047610 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.308485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0233457 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC ATATAGTAGT GGCCTTGACG GCAATGAGTT TGCTGGGGGG ATGCAGTATG TCTCCGGATT ATGCACCGCC AAAGGTGAAA GTCAGTGAAC TGTATTTAAA TGCGCCGACC GAGGGCGTGA GCACAGAAGG AGTGAGCTAC CAAGCCTGGT GGCACAAGTT TAATGACCCT CAGCTCAATG CGCTGGTGGC GAAGGCGCAG CAACAAAATA TTAGTCTGCA GATCGCCAGC GAGCGGGTCC GTGCTGCACG GGCCTATCAA GCCGCAGTGT CATCATTAAA AGTGCCAACC ATTTCAGTGG GCGCGGGATA CCTCGATATG CGTATCAGTG AAAATGATCC GCTGATGGGC GGTGCGGTTG GGGGCATAGG TCTGCCCGAT AGTTTGGGCG GTGGCAAGCT TAAGCTAATG AATCGCGATC CTAACAGCAC CACAGTGGGC GCAACCATTG CTTGGGAGGC AGATTTATTT GGTCGAATAG CGAGTTTAAG TCAGGCCGCT GAAATCCGCG CCGAACAGGC ACAATTGTAT CGTGCCAATC TGGCCACCCT AATGACTGCG GAAGTGATAG ACAACTATTT ACAATACCGT GGCACGCAGG AGCGTATGAC AATCGCAAGG CAAAACATCG CGGAGCAAGC CGAAGTGTTG GCCTTGGTGG AATCATTGGA GCGTAATGGC TATGGCTCAC CACTGGATGT CGCCAATGCT AGGGCTGCGC TTGCCGCCAG TGAGGCCATG TTACCCATGC TAAGTTCGGC CGAGCAGGCA CACTTACATC GATTAGCGAT TTTATTGGGG GAAAATCTGA CCGAGACTTC AGGGCGTTTA AGCGCAGCAG CCTTGCCCGC GATGAAGCAA TTCATCCCTA CGGGCGTTCC TTCCGAGTTG CTGACACGCC GCTTAGATAT TGCGATTGCT GAGCGTGAGA TGGCCGCAAA GAATCAAGAG CTGGGCGCGG CGATTGCGGC TAAGTATCCG AGCTTTTTCT TGACGGGGGC GCCGGGATTA TCGGCCGATC ATATCGACGA TCTTTTCTCA TCGGATTCCC TTACCTGGGC TCTAGGTGCG GGAGTGAGTT GGAATGTGTT CGATGGTGGT CGCACTCAAG CCATGGTGGA GATACAGGAA GCGGGTTTTA AAACCGCAGC GCTTAGCTAT CAGCAGGCGG TAAACAATGC CATTAATGAA GTTGAAACAG TGCTAAAGCA TTATGGTAAT AACCAGCAAT ATCATCGCTT TATTGCTAAA GCTGAGGCGC AGTCTGAGAT TGCTGTGCAA AAAGCAACAT CGCTTTATCG TGCTGGGTTA GAAAACCACT TGAGCGTGTT AAATGCGCAG AATGTGAAAA ACAATATGCA GGATGCGGAA GTGTTAGCTC GCCTACAAAC GGCCTCGAGT GTGGTGTCAC TCTACAAGGC CTTGGGTGGC GATTGGACAC TGGCAAATGC CATGGATTAA
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Protein sequence | MNKHIVVALT AMSLLGGCSM SPDYAPPKVK VSELYLNAPT EGVSTEGVSY QAWWHKFNDP QLNALVAKAQ QQNISLQIAS ERVRAARAYQ AAVSSLKVPT ISVGAGYLDM RISENDPLMG GAVGGIGLPD SLGGGKLKLM NRDPNSTTVG ATIAWEADLF GRIASLSQAA EIRAEQAQLY RANLATLMTA EVIDNYLQYR GTQERMTIAR QNIAEQAEVL ALVESLERNG YGSPLDVANA RAALAASEAM LPMLSSAEQA HLHRLAILLG ENLTETSGRL SAAALPAMKQ FIPTGVPSEL LTRRLDIAIA EREMAAKNQE LGAAIAAKYP SFFLTGAPGL SADHIDDLFS SDSLTWALGA GVSWNVFDGG RTQAMVEIQE AGFKTAALSY QQAVNNAINE VETVLKHYGN NQQYHRFIAK AEAQSEIAVQ KATSLYRAGL ENHLSVLNAQ NVKNNMQDAE VLARLQTASS VVSLYKALGG DWTLANAMD
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