| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2069 |
|---|
| Symbol | |
|---|
| ID | 4257234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2440513 |
|---|
| End bp | 2442357 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122737 |
|---|
| Product | signal peptide peptidase SppA, 67K type |
|---|
| Protein accession | YP_738114 |
|---|
| Protein GI | 114047564 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000747082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00035323 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTA ACCCATCGTT TTTCAAGAGA ATATGTTTAT TTATATGGAA CACCCTCAAC
GGGATCCGTA AATTCATACT CAACCTGATT TTTTTTGGCT TCCTCGCCAT CATCCTCATT
ACTATTGGCA GCAGTGAAGA TATTCAGGTC GAAGATAACT CAACATTGGT GCTTAATCTG
GCGGGCTCGA TTGTCGATCA AAAACAGCAG GTCGATCCGA TTGAAGCCGC ACTTAAGCAA
GGCAATAACG GCAGTAGCGA TGGCGAAATC CTGCTGGCAG ATATTATCTA TGTGATTGAT
AACGCGACGC ACGATAACAG GATCAGCACC ATAGTCTTAG ACTTAGCCGA GCTGAAACGC
GCAGGGATCA GCAAATTACA ATCCATCGGT GATGCCCTAA ATCGTTTTAA AGAAAGCGGC
AAAAAGGTGG TGGCAATTGG AAACTATTAC GAGCAAAACC AATACTTTCT CGCCAGCTTT
GCCGATACTA TTTACCTCAA TCCCCAAGGT AGCGTCTCCC TCGATGGCTT AAGTATGTAT
AACCAATACT TCAAGTCTGC CCTTGAGAAG CTCAAGATAA AGGCCCACAT TTTCCGCGTC
GGCACCTTTA AATCCGCAGT AGAACCATAC ATGCGTGACG ATATGTCGGA TGCAGCCAGA
GAAGCCAGTA GCGCCCTACT CGCCGATGTT TGGCAGAGTT ACACTCAAAC TGTGGCAGAA
AATCGCCAAA TCGATGCCAA TACCTTAGTG CTCGACTCGG CAAATTACCT CGCGCAACTC
GATAAGGCCG AAGGCGACTC CGCCGCTATG GCCATCAATA TGAAATGGGT CGATACCTTA
GCGACCGATG AAGAGTTCCG TAAAGTCATG CTCGATAGCG TGGGTAAAGA GAAGTCGGGT
GACAGCTTTA AACAGGTCAG CTTTTACGAC TACTTAACCT TAGTGACGCC TTTGCCAAGC
TTTGTTGAGC AAGACAGTGT CGGCATTATC GTTGCCAGCG GTACCATTTT AAATGGCAGC
CAACCCGCCG GCCAAATCGG TGGCGATAGC ACCGCAGAGC TGTTACGTAA GGCGCGATTT
GATAAGCATA TCAAAGCGCT AGTTCTTCGC GTCGACAGCC CTGGCGGTAG CGCCTTTGCC
TCAGAGCAGA TCCGCCAAGA ATTACTCGCC CTCAAAGCGG CGGGTAAACC TGTGGTGGTG
AGTATGGGCA GCCTTGCGGC GTCTGGCGGT TATTGGATTT CGGCCAGCGC CGATTATATC
TTCGCAACCC CAACCACACT GACGGGTTCT ATCGGGATCT TTGGGATGAT CACTACTTTC
GAAGATTCAC TCGCCAGCTT AGGTATTCAT ACCGATGGTG TATCGACCTC AGAATGGGCA
GGTTTGTCAG TGACTCGTAC CCTCTCGCCA CAAATCGAGT CGGTTATCCA GCGCCATATC
GAGCGTGGCT ACTTAGACTT TATCTCACTG GTCGCTAAGG AACGTAAAAT GACCTTAGAA
CAAGTGGATA GAATCGCCCA AGGCCGTGTG TGGAGTGGTA AAAAAGCCCT AGAGTTAGGT
TTAGTGGATG AACTTGGCGA TATCGACCAA GCCGTCGCCA AAGCCGCTAA ACTTGCAGAT
TTAAGCCTGT TTGACACCCG CTTAATTGAG CAAGAGCTCA CGCCTGAGCA GCGTTTTGTG
CAGCAAATGT TTGCCTCTGT TTCAGCCTAC TTACCCGCGT CACTCAGCCA TTCAACACTG
CTTGAGCAAA TGCTGGCTCA ATGGACTGGC AACTTAAAGA CCATCGCGGC CTTTAACGAT
CCTAACCATG TGTATGTGTA TTGTGACAGC TGTGCTATCA ATTAA
|
|---|
| Protein sequence | MSANPSFFKR ICLFIWNTLN GIRKFILNLI FFGFLAIILI TIGSSEDIQV EDNSTLVLNL
AGSIVDQKQQ VDPIEAALKQ GNNGSSDGEI LLADIIYVID NATHDNRIST IVLDLAELKR
AGISKLQSIG DALNRFKESG KKVVAIGNYY EQNQYFLASF ADTIYLNPQG SVSLDGLSMY
NQYFKSALEK LKIKAHIFRV GTFKSAVEPY MRDDMSDAAR EASSALLADV WQSYTQTVAE
NRQIDANTLV LDSANYLAQL DKAEGDSAAM AINMKWVDTL ATDEEFRKVM LDSVGKEKSG
DSFKQVSFYD YLTLVTPLPS FVEQDSVGII VASGTILNGS QPAGQIGGDS TAELLRKARF
DKHIKALVLR VDSPGGSAFA SEQIRQELLA LKAAGKPVVV SMGSLAASGG YWISASADYI
FATPTTLTGS IGIFGMITTF EDSLASLGIH TDGVSTSEWA GLSVTRTLSP QIESVIQRHI
ERGYLDFISL VAKERKMTLE QVDRIAQGRV WSGKKALELG LVDELGDIDQ AVAKAAKLAD
LSLFDTRLIE QELTPEQRFV QQMFASVSAY LPASLSHSTL LEQMLAQWTG NLKTIAAFND
PNHVYVYCDS CAIN
|
|---|
| |