Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2035 |
Symbol | |
ID | 4258197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2398824 |
End bp | 2400284 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638122703 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_738080 |
Protein GI | 114047530 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.152355 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.152355 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCGG CGCCTACGAT GTCACCCATA TCAATGGGAT CTCGTTTGTG CTTTAAACCG TTGTGTTTGT GCATCTTGAC GGCGCTAACG GTCGCAGGCT GTGCCATGGG GCCAGATTAT GAACGGCCCG AGCTCACTTT ACCAAGCCAG TATCAAGCAC AAATCTTGTC GCAAACGAGT GCAGAGCAGG GCAGCAGTTT AAAGGAAGTA TCGGCCTTAT CTTGGCGGCA TTTTTACCAA GATCCTGTGC TGATTTTATT GATTGAACAT GCGCTTTCGA GCAACCTCGA TCTGCAAATG GCGCAGTCGC GTCTTTTGGC CGCACGCTCG AAAATGACTG TGGTCGACAG CGCACTTTGG CCAGAGATCT CTGCCAGTGC GGGTTTTGAA CGCAGTTTAG ACAGCGGCAC GACCAGTAAA GACCCAAGCC CAGGTACAAC ATTAGATTTA GCAGGCACAG TGTCGTGGGA ACTCGACCTT TGGGGAGCAA ATCGCAGGGC GAGTGAGGCC GCAAAAGCTG ATTATCTCTC TGAGGTTGAA AAACTGAGGC TCACCTATGT CAGCCTTATC AGTGACATTG CTAGCCGTTA TTATGAATGG CTCGATATCG AGCAGCGTTA TAGTGTGTCT ATCGATACCG TAGGCATACG GCAGAAGGAA CTGGATATTG CCAAGCTTCG CCATGCCAAT GGTGTGATTT CGGGCCTCGA TGTGCGTCAG GCTGAAGTCG AACTGCAGAG TACAAAAGTG ACCTTGCCGA CATTAGACTA TGAAAGAAAA TACAAAATAA ATCAGCTGCA TATCTTACTC GGAGAATACG ATTACGCCTT GCCATCTCCT CAAGGTTTAC CCGAGAATGT TGGTTTACCC TATGAGCTGA GCGCAGGCGT GCCCTCTGAA TTATTGACAT TAAGGCCCGA TGTCAAAATG TCAGAACAAG CAATGATAGC CGCCAATGCG CAGGTTGGGA TTGCCAAGGC TGCGTTCTTT CCTAAGTTCA CCATTTCGGG CCAATATGGC CGGGAAAATA ATCACCTTAA GGATATTTTT GATAGCAATG GCGTGACTTG GTCGCTCCTT GGCGGCATTA GTGCACCGAT TTTTAACCGA GGGAAAATTG CCGCCGAATA CGATATCGCC ACCGAAGAGG CGAAGCAGTC GATGCTAAGT TATCGCAATG TGGTGTTGAC CGCTTATTTT GATGTGAACG ATGCGCTGAA TAATCTAAAA CGTGCCCAAG AGGCCATCAA AGCGCAAAGG GAATTAGTCC AATCTTCATC GGCTTATGCG CGTCTTGCAC GGCTGCGTTA CCAAAATGGT GTCGCTACTT CGCTGGATTT AATGGATGCG CAGCGGCAAT TATTTAGCGC CCAATTAGCC TACAGCGAGA TCTTAAGGGA TAAGCAATTG GCCAAAATTG CCTTGTATCG AGCCTTGGGT GGTGGTGCAG TCAGTGAATA A
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Protein sequence | MDAAPTMSPI SMGSRLCFKP LCLCILTALT VAGCAMGPDY ERPELTLPSQ YQAQILSQTS AEQGSSLKEV SALSWRHFYQ DPVLILLIEH ALSSNLDLQM AQSRLLAARS KMTVVDSALW PEISASAGFE RSLDSGTTSK DPSPGTTLDL AGTVSWELDL WGANRRASEA AKADYLSEVE KLRLTYVSLI SDIASRYYEW LDIEQRYSVS IDTVGIRQKE LDIAKLRHAN GVISGLDVRQ AEVELQSTKV TLPTLDYERK YKINQLHILL GEYDYALPSP QGLPENVGLP YELSAGVPSE LLTLRPDVKM SEQAMIAANA QVGIAKAAFF PKFTISGQYG RENNHLKDIF DSNGVTWSLL GGISAPIFNR GKIAAEYDIA TEEAKQSMLS YRNVVLTAYF DVNDALNNLK RAQEAIKAQR ELVQSSSAYA RLARLRYQNG VATSLDLMDA QRQLFSAQLA YSEILRDKQL AKIALYRALG GGAVSE
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