Gene Shewmr7_2035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2035 
Symbol 
ID4258197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2398824 
End bp2400284 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content49% 
IMG OID638122703 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_738080 
Protein GI114047530 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.152355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.152355 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCGG CGCCTACGAT GTCACCCATA TCAATGGGAT CTCGTTTGTG CTTTAAACCG 
TTGTGTTTGT GCATCTTGAC GGCGCTAACG GTCGCAGGCT GTGCCATGGG GCCAGATTAT
GAACGGCCCG AGCTCACTTT ACCAAGCCAG TATCAAGCAC AAATCTTGTC GCAAACGAGT
GCAGAGCAGG GCAGCAGTTT AAAGGAAGTA TCGGCCTTAT CTTGGCGGCA TTTTTACCAA
GATCCTGTGC TGATTTTATT GATTGAACAT GCGCTTTCGA GCAACCTCGA TCTGCAAATG
GCGCAGTCGC GTCTTTTGGC CGCACGCTCG AAAATGACTG TGGTCGACAG CGCACTTTGG
CCAGAGATCT CTGCCAGTGC GGGTTTTGAA CGCAGTTTAG ACAGCGGCAC GACCAGTAAA
GACCCAAGCC CAGGTACAAC ATTAGATTTA GCAGGCACAG TGTCGTGGGA ACTCGACCTT
TGGGGAGCAA ATCGCAGGGC GAGTGAGGCC GCAAAAGCTG ATTATCTCTC TGAGGTTGAA
AAACTGAGGC TCACCTATGT CAGCCTTATC AGTGACATTG CTAGCCGTTA TTATGAATGG
CTCGATATCG AGCAGCGTTA TAGTGTGTCT ATCGATACCG TAGGCATACG GCAGAAGGAA
CTGGATATTG CCAAGCTTCG CCATGCCAAT GGTGTGATTT CGGGCCTCGA TGTGCGTCAG
GCTGAAGTCG AACTGCAGAG TACAAAAGTG ACCTTGCCGA CATTAGACTA TGAAAGAAAA
TACAAAATAA ATCAGCTGCA TATCTTACTC GGAGAATACG ATTACGCCTT GCCATCTCCT
CAAGGTTTAC CCGAGAATGT TGGTTTACCC TATGAGCTGA GCGCAGGCGT GCCCTCTGAA
TTATTGACAT TAAGGCCCGA TGTCAAAATG TCAGAACAAG CAATGATAGC CGCCAATGCG
CAGGTTGGGA TTGCCAAGGC TGCGTTCTTT CCTAAGTTCA CCATTTCGGG CCAATATGGC
CGGGAAAATA ATCACCTTAA GGATATTTTT GATAGCAATG GCGTGACTTG GTCGCTCCTT
GGCGGCATTA GTGCACCGAT TTTTAACCGA GGGAAAATTG CCGCCGAATA CGATATCGCC
ACCGAAGAGG CGAAGCAGTC GATGCTAAGT TATCGCAATG TGGTGTTGAC CGCTTATTTT
GATGTGAACG ATGCGCTGAA TAATCTAAAA CGTGCCCAAG AGGCCATCAA AGCGCAAAGG
GAATTAGTCC AATCTTCATC GGCTTATGCG CGTCTTGCAC GGCTGCGTTA CCAAAATGGT
GTCGCTACTT CGCTGGATTT AATGGATGCG CAGCGGCAAT TATTTAGCGC CCAATTAGCC
TACAGCGAGA TCTTAAGGGA TAAGCAATTG GCCAAAATTG CCTTGTATCG AGCCTTGGGT
GGTGGTGCAG TCAGTGAATA A
 
Protein sequence
MDAAPTMSPI SMGSRLCFKP LCLCILTALT VAGCAMGPDY ERPELTLPSQ YQAQILSQTS 
AEQGSSLKEV SALSWRHFYQ DPVLILLIEH ALSSNLDLQM AQSRLLAARS KMTVVDSALW
PEISASAGFE RSLDSGTTSK DPSPGTTLDL AGTVSWELDL WGANRRASEA AKADYLSEVE
KLRLTYVSLI SDIASRYYEW LDIEQRYSVS IDTVGIRQKE LDIAKLRHAN GVISGLDVRQ
AEVELQSTKV TLPTLDYERK YKINQLHILL GEYDYALPSP QGLPENVGLP YELSAGVPSE
LLTLRPDVKM SEQAMIAANA QVGIAKAAFF PKFTISGQYG RENNHLKDIF DSNGVTWSLL
GGISAPIFNR GKIAAEYDIA TEEAKQSMLS YRNVVLTAYF DVNDALNNLK RAQEAIKAQR
ELVQSSSAYA RLARLRYQNG VATSLDLMDA QRQLFSAQLA YSEILRDKQL AKIALYRALG
GGAVSE