Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2030 |
Symbol | |
ID | 4258192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2391756 |
End bp | 2393753 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638122698 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_738075 |
Protein GI | 114047525 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.371966 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGGATA AGGATTTGTT TATGTCTTAC CCTACAACGC CGTCAACTCA GGCCTCGGAA TATACGTCAT TATTACAGCA ACAGTTTGGT TTTGATGGGT TCAGGCAAGG GCAACATGAG GTTGTCTCGC AGTTGTTGTC GGGCCATTCG AGCCTTGCTA TTTTTCCCAC CGGCTCAGGA AAATCACTCT GTTACCAATT TACCGCTCTG CAACTTCCCC ATTTAACCTT AGTGGTGTCA CCCTTACTGG CGTTGATCAA AGATCAACTG AGTTTCCTGC ATGAGAAGGG CATTAAAGCG GCAAGTATCG ACTCAACCTT AACGCCTGAA TTAACCCAAC AGGTCATGCG TGATGCTCGC TCTGGCGAGT TAAAACTCTT GATGGTATCG GTTGAACGTT TTAAAAATGA GCGCTTTAGG CAATTTATTC AATCAATTCC TATCTCTATG CTGGTTGTCG ATGAAGCGCA CTGCATCTCG GAATGGGGAC ATAATTTTCG CCCCGACTAT TTAAAGCTTC CCGATTATCG CCGTGAATTA GCAATTCCAT TGGTGTTGTT ACTCACGGCG ACCGCGACAC GTAAAGTGAA ACTGGATATG GCGGCGCGTT TCGATATCAA GCCACAACAT ATTGTTCAAA CAGGCTTTTA TCGTTCAAAC CTCGACTTGA CCGTCTTGCC TGTAGCAAGC CAACACAAAC TGACGGCATT GCAACAGCAG CTTAATCACT TTACTGGTGC GGGGATTGTG TATGTGACTT TGCAGCATAC TGCTGAGGAT GTTGCCGCGA AACTTTGCCA AATGGGCTTT GATGCGAGTG CCTATCATGC GGGGTTTGAG GATGAAAAAC GTCAGCAAAT TCAGCAGGAT TTTATGCAAG GTAAGATCCG CATCGTGGTT GCGACTATCG CCTTTGGTAT GGGCATAGAC AAAAGCAATA TTCGCTTTGT GGTTCACTAC GATCTGCCTA AATCCATAGA GAATTATTGC CAAGAAATTG GCCGTGCAGG AAGGGATGGC CAGCTCTCAC ATTGCGTGAC CTTGGCCAAT TTAGATGGCA TAAACACAGT CGAAAATTTT GTTTACGGCG ATACACCGGA ACTGGCCAGT ATTACTGCCG TGATTGATAA CATTCGCGAA GAAACCCATA ACGGACGTTG GGAGCTGCAA CTGCATCAGC TATCAAATGT GAGTAATATC AGGCAGCTCC CCCTTAAAAC CTTGCTAGTT CAGCTTGAAA TGATAGGCGT GATTAAGCCG CTTTATGCTT ATTACGCCGA TATCAGTTAC CGTTTTATTG AGCCACAGGC GCAGATCTTG AGCCAGTTTT CCCCCGAGCG TCAGGCATTT TTAAATGACA TCTTTACCCA TACTCAGATG AAACGAGTAT GGGGCAGTTT AGATTTTTCC GCGCTCTACC AAGCCACAGG TGCAGAACGT ACACGGGTAT TAGCGGCATT AGAATATCTT GCCAGTCAAC AGCTTATCGA ATTGGAAGCT AAGCGAGTAA CGGATGTCTA TCAAGTGAAT GCTGAGGTGT TAGCACAGGG GCATTTAGCC GATGAGCTCC ATCAATACTT TACCGACAAA GAGGCGAAAG AAGTCGCCCG TATTGCCCAG TTAGTGCGAT TTTTTGAGCT AACGACTTGC TTAAATTACA ATTTGGCCCG CTATTTTGAT GATAATGCCG CGCCTCAATC CTGTGGTCAT TGCAGTGTTT GCCGTGGTCA AATGGCTAAA TTGGCGTATT CAGAAGAGCC AAAGTGGCCT GATGATGCTC AGCTTAAGGC CGATTTGCAT GAACTGGAGC GTTTAGCGGA GTCGAAAGGT TTAGCTTCAT TATCCTTAGA TACTCAATGC CGGTTTTTGG CTGGAATGAC ATTACCGCTG TTTACTCGCT TACAAGTGCG GAAATTATCG GGCTATGGTC GCTGCGAATA CCTCCGATAT GCAGAGATTA AAGCCAAATT AGCGCAGTTA GTCGACGCAC CTTGCTGA
|
Protein sequence | MGDKDLFMSY PTTPSTQASE YTSLLQQQFG FDGFRQGQHE VVSQLLSGHS SLAIFPTGSG KSLCYQFTAL QLPHLTLVVS PLLALIKDQL SFLHEKGIKA ASIDSTLTPE LTQQVMRDAR SGELKLLMVS VERFKNERFR QFIQSIPISM LVVDEAHCIS EWGHNFRPDY LKLPDYRREL AIPLVLLLTA TATRKVKLDM AARFDIKPQH IVQTGFYRSN LDLTVLPVAS QHKLTALQQQ LNHFTGAGIV YVTLQHTAED VAAKLCQMGF DASAYHAGFE DEKRQQIQQD FMQGKIRIVV ATIAFGMGID KSNIRFVVHY DLPKSIENYC QEIGRAGRDG QLSHCVTLAN LDGINTVENF VYGDTPELAS ITAVIDNIRE ETHNGRWELQ LHQLSNVSNI RQLPLKTLLV QLEMIGVIKP LYAYYADISY RFIEPQAQIL SQFSPERQAF LNDIFTHTQM KRVWGSLDFS ALYQATGAER TRVLAALEYL ASQQLIELEA KRVTDVYQVN AEVLAQGHLA DELHQYFTDK EAKEVARIAQ LVRFFELTTC LNYNLARYFD DNAAPQSCGH CSVCRGQMAK LAYSEEPKWP DDAQLKADLH ELERLAESKG LASLSLDTQC RFLAGMTLPL FTRLQVRKLS GYGRCEYLRY AEIKAKLAQL VDAPC
|
| |