| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1996 |
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| Symbol | araD |
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| ID | 4258682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2360636 |
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| End bp | 2361331 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638122662 |
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| Product | L-ribulose-5-phosphate 4-epimerase |
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| Protein accession | YP_738042 |
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| Protein GI | 114047492 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000658884 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000198726 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGTCTTTTT TAGAGCTAAA ACGCGAAGTA TACGAAGCCA ACATGGAGCT TGAGAAACGC
AAACTGGTGA CTTACACCTT TGGCAACGTT TCACAAATTG ATCGCCAACT CGGCGTGATT
GGTATCAAGC CCAGCGGCGT GCCCTATGAA GATTTGAAGG TTGAAGACAT TGTGATTGTT
GACCTTGAGA ATCAAATCGT AGAAGGGCGC ATGCGTCCTT CATCCGATAC CAAGACACAC
ACCTATTTGT ATCGCCAGTG GCAGAGTATT GGTGGCATTA CCCATACCCA TTCGACCTAT
GCCACCGCCT GGGCGCAGGC GCAGATAGCG ATTCCCTGCT TAGGCACGAC ACAGGCCGAT
TATGTGTACG GTGAAATCCC ATGCACAGCA GTGATGCGCA ACGATCAGAT CAGCCGCGAC
TACGAAGAAG AAACCGGCGT GCAGATCCTC GATTGTTTCG CCGACCGAGA TCCCAACGAG
TCACCCATGG TGATAGTGGC AGGCCATGCG CCGTTCACTT GGGGCGCGAA TGCGGCTAAA
TCTGTGTATC ACGCCGTGTT ACTCGAAGAA ATCGCTCGGA TGGCGTATCT CACCAAAACC
TTATCACCAG GTATCAGTCA GTTAAAACAA GAGCTTATTG ATAAGCATTA TTTGCGTAAG
CATGGAAAAG ACGCTTATTA CGGCCAAAGC AAGTAA
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| Protein sequence | MSFLELKREV YEANMELEKR KLVTYTFGNV SQIDRQLGVI GIKPSGVPYE DLKVEDIVIV
DLENQIVEGR MRPSSDTKTH TYLYRQWQSI GGITHTHSTY ATAWAQAQIA IPCLGTTQAD
YVYGEIPCTA VMRNDQISRD YEEETGVQIL DCFADRDPNE SPMVIVAGHA PFTWGANAAK
SVYHAVLLEE IARMAYLTKT LSPGISQLKQ ELIDKHYLRK HGKDAYYGQS K
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